Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0551 ATGGGGAAGAAGGGAAGTAGTTCTTGGTTAACTGCTGTCAAAAGGGTATTCAGATCTCCCACCAAAGACAGTGACAAAAGGGGTAACAGAAGAGGAGAGGATTATGATCAAGAAAAAGATGAAGAGAAGAAGAGAGAAAAAAGAAGATGGATTTTCAGAAAGAATCATGAAACAGTGAGCACAAAACAAACTCCAACAAAGTTGAAGCATGATGTGGCTGCTGCAACAACAAATGCAATTGTGTCCTCGAGGACAGACCAAGATCAGAAGCATGCACTTGCAACGGCTGAGGCTGCTATGGCCACTGAACGAGCTTCTGTAGAGGGTGCAAGGTTGACCATGCCAAGTACTACTACTGATAGTAATCATGTTAGGGACCATTTTGCTGCTATTGTGATTCAAACAGCTTTTAGAGGATATTTGGCAAGAAGAGCGCTTCGTGCGCTTAAGGGATTGGTGAAATTGCAGGCTTTGGTAAGAGGTCACAATGTTAGGAAGCAGGCAAAGGTGACCCTTAGATGCATGCAGGCTTTGATTAGAGTACAAGCAAGGGTTCTTGGTCAAAGCATAAGGTCTTCACTTGATGGTAATAGAAAATCTACCTTCAGTGACACCTCCAGCGTTTGCGAATCACGGTATCTTCAGGACATTTCAGATAGGAAATCAGTATCAAGAGAGGGAAGCAGCATTGCAAATGATTGGGATGAAAGGCCTCACACAGTTGAAGAAGTTAAGGCTATGTTGCAGCAGAGGAAGGAAGCAGCTATGAAGCGAGAAAAGTCCTTGTCTCAAGCTTTTTCACAACAGATTGGGAAGAATGGGTGGGCATCATCAATTGGAAATGAAGATGATCTCGATGAGAGGCCAAAATGGCTCGACCCGTGGATGGCTACAAAGCCATCGGAGGGCAGGGGACGGGCGTCAACTGATCAAAGAGACCTCATTAAGACCGTGGAAATAGACACCGCTCAGCCTTACTCATATCTAGGAGGAGCCAATTACAGAAGATCACATCCAAATTACCAATATAACCCACAACACCAACAACAAAGACATTCCATTGCTTCCCCAATGCACAGAACCCACCAAAATGGATCAATGCAGCAATCCCCTGCAACTCCATCTCCAGCAAAATCAAGACCCGTCCAAATCCGGTCTACAAGCCCTCGCTGCGTTAGAGAAGACAGAACCTACCACACCTCACAAACACCAAGCCTCAGGTCTACTTATCATTACACAGGGAATTTGTGCCAAATTTCCCAGTCTGGAACAAGTAATGGTGGTGCTGCTGCTGCTGCTGCATTGCCTCATTACATGGCTGCAACCGAGTCTGCAAAGGCTAGAATTCGATCTCAGAGCGCACCGAGGCAGAGGCCGTCAACACCAGAGAGAGATAGAGGAGCTGGATCAGTTAAGAAAAGGCTTTCATTCCCGGCTCCAGATCCTTATAATGTAGGAGCTGGTTATGGAAATTTTCGGCAGAATTTAAGGAGTCCAAGCTTCAAGAGTGTAGGTGCATCACATTTTGGTATTGAAAAGCAATCCAACTACTCTTCTTGCTGCACTGAGAGTATTGGTGGAGAGATTTCTCCTTTTTCAACCGGCGATCTTAGAAGGTGGTTCAGATGA 1629 0.4543 MGKKGSSSWLTAVKRVFRSPTKDSDKRGNRRGEDYDQEKDEEKKREKRRWIFRKNHETVSTKQTPTKLKHDVAAATTNAIVSSRTDQDQKHALATAEAAMATERASVEGARLTMPSTTTDSNHVRDHFAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKVTLRCMQALIRVQARVLGQSIRSSLDGNRKSTFSDTSSVCESRYLQDISDRKSVSREGSSIANDWDERPHTVEEVKAMLQQRKEAAMKREKSLSQAFSQQIGKNGWASSIGNEDDLDERPKWLDPWMATKPSEGRGRASTDQRDLIKTVEIDTAQPYSYLGGANYRRSHPNYQYNPQHQQQRHSIASPMHRTHQNGSMQQSPATPSPAKSRPVQIRSTSPRCVREDRTYHTSQTPSLRSTYHYTGNLCQISQSGTSNGGAAAAAALPHYMAATESAKARIRSQSAPRQRPSTPERDRGAGSVKKRLSFPAPDPYNVGAGYGNFRQNLRSPSFKSVGASHFGIEKQSNYSSCCTESIGGEISPFSTGDLRRWFR 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0551 542 Pfam IQ calmodulin-binding motif 129 147 IPR000048 GO:0005515
Lal22g0551 542 Pfam IQ calmodulin-binding motif 153 169 IPR000048 GO:0005515
Lal22g0551 542 MobiDBLite consensus disorder prediction 443 477 - -
Lal22g0551 542 Pfam Protein of unknown function (DUF4005) 388 495 IPR025064 -
Lal22g0551 542 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 542 - -
Lal22g0551 542 MobiDBLite consensus disorder prediction 1 47 - -
Lal22g0551 542 ProSiteProfiles IQ motif profile. 150 177 IPR000048 GO:0005515
Lal22g0551 542 ProSiteProfiles IQ motif profile. 126 154 IPR000048 GO:0005515
Lal22g0551 542 PANTHER IQ-DOMAIN 5-RELATED 1 542 - -
Lal22g0551 542 SMART iq_5 148 169 IPR000048 GO:0005515
Lal22g0551 542 SMART iq_5 125 147 IPR000048 GO:0005515
Lal22g0551 542 MobiDBLite consensus disorder prediction 329 406 - -
Lal22g0551 542 Gene3D - 125 178 - -
Lal22g0551 542 MobiDBLite consensus disorder prediction 337 386 - -
Lal22g0551 542 MobiDBLite consensus disorder prediction 18 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0551 Lal-Chr22 3740151 3743203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0551 9 542 IQD Protein Family AT4G00820 55.296 2.58e-168 486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0551 22 3740151 3743203 Lal22g0551 22 3740151 3743203 ECH
Lal22g0551 22 3740151 3743203 Lal3g1533 3 21032200 21035372 ECH
Lal6g0611 6 3934358 3937811 Lal22g0551 22 3740151 3743203 LSH
Lal22g0551 22 3740151 3743203 Lal18g1056 18 13590609 13593928 LSH