Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0550 ATGTCTCAACAAAGGCAATTTCAGATGGTGGGTGGTAACAATTCAAACCAATATAATGACACAACATTTACCAAACTCTTTGTTGGAGGGTTAGCTTGGGAAACTCAGAGGGAAACAATGAGGAGGTATTTTGAGCAATTTGGAGAGATCTTAGAAGCTGTTGTGATCACAGATAAGAATACTGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCAGAGGCAGCAATGAGAGCATGTCAGAATCCATCTCCAGTTATTGATGGGAGAAGAGCAAACTGCAATTTGGCATCTCTTGGTGCAAATAAGAATAGACCACAACCTCCACAGCATGGTTTTGGGAGGTTCAGGCCACCACCTGGACTGGTGGCACAACCTTCTTATCATGGTTCTTCATCTACATTTTTCTACCAACCCATTGGGCAAAACACATTTCCTTATTCAACTTATGGATATTCTGGATATTCACAAGACAACTTGTATCCCACGGGCTATTATGGTGTCTATGGAGGTCAACATTTTTCACCTTACTATCCATCAGGGGCTGCTTCTGGGGCAGTTGGGTTGGTCCATAATATTTACCCTTACTATGGTCAATATGCACATACTAGCCAAGATCATGGTTTTGGAGTTCAATACCCTCAAATGGCACAATTGCCAATTCCGCCTCAACAGCATTATGGCTCTACAGGGATTTTGTCACTTCCTTCTTCAATTGCATTACCAACAACAACTACTAGTGCAGTTTCAGCAACAACAACAACAACAACTGCAACCACAACAACAATATCTGTAGGTGTGACAACATCAAAAGCTTCTGAAAAGGCCTCTGAACAAAATTCTACATCACAAGGCTAA 864 0.4167 MSQQRQFQMVGGNNSNQYNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPQPPQHGFGRFRPPPGLVAQPSYHGSSSTFFYQPIGQNTFPYSTYGYSGYSQDNLYPTGYYGVYGGQHFSPYYPSGAASGAVGLVHNIYPYYGQYAHTSQDHGFGVQYPQMAQLPIPPQQHYGSTGILSLPSSIALPTTTTSAVSATTTTTTATTTTISVGVTTSKASEKASEQNSTSQG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0550 287 Gene3D - 1 116 IPR012677 -
Lal22g0550 287 SUPERFAMILY RNA-binding domain, RBD 12 123 IPR035979 GO:0003676
Lal22g0550 287 PANTHER BOULE-RELATED 1 271 IPR037366 GO:0003729
Lal22g0550 287 PANTHER - 1 271 - -
Lal22g0550 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Lal22g0550 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Lal22g0550 287 CDD RRM_RBM24_RBM38_like 24 99 - -
Lal22g0550 287 SMART rrm1_1 25 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0550 Lal-Chr22 3735298 3738105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0550 20 233 C2H2 Transcription Factor Family AT2G19380 31.739 2.42e-16 77.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0550 22 3735298 3738105 Lal22g0550 22 3735298 3738105 ECH
Lal22g0550 22 3735298 3738105 Lal18g1057 18 13619252 13621780 LSH