LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal22g0545	ATGGAAGCACAAAGCTCTCACGATGCCCAAGTTATTGATGTCAGTGGAGATATTCTTCCTGGACGAAGTAAGATTTGTGCAGAAGTCCCATGTGGGTTTGCAGATGCTGGATCCATCTCCAAGGATTCTGAAGAACGATCAACTTCCATGCGAAAGCTTTTGATGGCAGTGGTCCTCTGTGTTATTTTCATGGCTGTTGAGGTAGTTGGTGGCATCAAAGCCAACAGTCTCGCAATATTGACTGATGCAGCACATTTGCTTTCAGATGTTGCAGCCTTCGCCATCTCCTTATTTTCTTTATGGGCTGCTGGATGGGAAGCTACTCCCCGCCAGTCATATGGATTTTTCCGAATAGAGATTCTTGGTGCTTTGGTTTCTATCCAAATGATATGGTTGCTTGCTGGAATTCTGGTATATGAAGCCATTGCTAGAATCGTTGCTGGTTCTGGCGAGGTGGATGGGTTTTTAATGTTTCTAGTTTCTACATTTGGTCTAGTGGTTAACATTGTTATGGCTTGTTTATTGGGGCATGATCACGGCCATGGCCATGGTCATGGACATGATCACGGCCATGGACATGATCACGGCCATGGAGAAGATGATCATCACGATCATGGGCATCATGGGCATCATGGGCACAGCCATGGAGTTTCAGTGTCTCATCATCATGATGTAAAGCACACAATAACTGAGCACCATCATACTCATGATGTTGAAAAGCCTTCAGGAGCACACAGTCATGCTCACAAGGATGTCACTGAACCACTTATTGGTGAATCAAAAGACGGGCCTAAGAAGAAAAAGCAATGGAACGTAAATGTGCAGGGGGCTTATCTACACGTACTCGGGGACTCTATTCAGAGTGTTGGGGTAATGATTGGGGGAGCAGTCATATGGTATAAGCCTGAATGGCAAATAGTTGATTTGATTTGCACTCTAATCTTTTCAGTAATTGTTTTGGGGACAACTATCAATATGCTGAGAAACATATTGGAAGTCCTGATGGAGAGCACGCCGCGTGAGATTGATGCTACTAAGCTGGAAAGAGGGCTGTTGGAGATGGAAGAAGTGGTGGCTGTTCATGAGCTGCATATATGGGCCATTACAGTTGGGAAAATTTTGTTAGCTTGTCATGTTAAAATCAGACCTGAAGCAAATGCAGACCTGGTGCTGGACAAGGTTATAGAGTACATCGAAAGGGTGTATAACATCAGTCATGTAACTATACAGATAGAGCGCTAG	1242	0.4436	MEAQSSHDAQVIDVSGDILPGRSKICAEVPCGFADAGSISKDSEERSTSMRKLLMAVVLCVIFMAVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIARIVAGSGEVDGFLMFLVSTFGLVVNIVMACLLGHDHGHGHGHGHDHGHGHDHGHGEDDHHDHGHHGHHGHSHGVSVSHHHDVKHTITEHHHTHDVEKPSGAHSHAHKDVTEPLIGESKDGPKKKKQWNVNVQGAYLHVLGDSIQSVGVMIGGAVIWYKPEWQIVDLICTLIFSVIVLGTTINMLRNILEVLMESTPREIDATKLERGLLEMEEVVAVHELHIWAITVGKILLACHVKIRPEANADLVLDKVIEYIERVYNISHVTIQIER	413

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal22g0545	413	SUPERFAMILY	Cation efflux protein cytoplasmic domain-like	341	412	IPR036837	-
Lal22g0545	413	MobiDBLite	consensus disorder prediction	181	207	-	-
Lal22g0545	413	SUPERFAMILY	Cation efflux protein transmembrane domain-like	47	336	IPR027469	-
Lal22g0545	413	PANTHER	METAL TOLERANCE PROTEIN A1	192	413	-	-
Lal22g0545	413	PANTHER	METAL TOLERANCE PROTEIN A1	1	187	-	-
Lal22g0545	413	Pfam	Cation efflux family	53	335	IPR002524	GO:0006812\|GO:0008324\|GO:0016021\|GO:0055085
Lal22g0545	413	TIGRFAM	CDF: cation diffusion facilitator family transporter	50	413	IPR002524	GO:0006812\|GO:0008324\|GO:0016021\|GO:0055085
Lal22g0545	413	Gene3D	Cation efflux protein transmembrane domain	49	334	IPR027469	-
Lal22g0545	413	PANTHER	CATION EFFLUX PROTEIN/ ZINC TRANSPORTER	192	413	-	-
Lal22g0545	413	PANTHER	CATION EFFLUX PROTEIN/ ZINC TRANSPORTER	1	187	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal22g0545	Lal-Chr22	3673849	3677612	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal22g0545	22	413	Inorganic Solute Cotransporters	AT3G61940	58.270	4.69e-143	409

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal22g0545	K14689		-	gmx:100794876	602.438

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal22g0545	22	3673849	3677612	Lal22g0545	22	3673849	3677612	ECH

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