Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0544 ATGGAGAGGTTTCAAGAACCCGGACCCCTCAATTCCTGTTTCACAGGTGACCATTTTGAAGTGAATTCTTTTGAGCAACAACGCTTGGTTGATGCAGAAAGTTTCAGATTTGTGGAGAATGAAGAACAATTTCTGATATCAAGTTTAGAGGATAACATGCCATTCTTGCAGATGCTTCAGAGTGTGGAGTCTTCTCCACAGTTTTTCCCTTTAAAAGAGCCAAGTTTTAAAACACTTCTAAGTTTACAACACATGAAGAAACAACAACCATGGGAAAACATAGCCTACATTCCAAGAATGGATACACAAATTCAAGCAGCAATGGAGCTTGAAAGCTGTGTGACACATGACATATTGGAGATGCAGTCACCAGTGAAATCTGAAAGCAATAATGAACTTCACCAACACACACCTTCAACTGCTTCATGTGTTGTTGAGAAAGTGATGAGTTATGATGAGTGCAACCATGCTATTATTGCTAATGTTAACACACAATCATCATGTCACAAAACTCAGATAGCTACAAGGGAAAGGAGGAAGAGAAAGAGAACAAGACCAACCAAGAGCATAGAAGATGTAGAGAATCAACGCATGACTCACATTGCTGTTGAACGCAATAGGAGACGCCAAATGAATGACCATCTCAGTGTCCTAAGGTCCCTCATGCCCCCTTCTTATATTCAAAGGGGTGACCAAGCTTCTACTATTGGAGGTGCAATTGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAATCACTTAAAGCACAAAAAATGGTGAGAAAAAATGAAGAGGGTAGTAATGGTAATAATAATAATGGTTCTTGTTCAAGTGGGTTGTGTAAGCCAGCAGCGTCATTGTTATGTAGTGAGGAAGCAAAGTTTGGGGATGAGGTGAAGACAGAAATGAATTCAAATTTAGGGCACATAGAAGTAACATTGATTCAAACTCATGTTAACTTGAAAATAGAGTGCCAAAGGAAGCCTGGTCAATTGATAAAAGTGATTGTTGCTTTGGAGGATCTTAGACTAACTATTCTGCACCTCAACATTACCTCCACTGTGACCTCTGTCCTCTACTCTCTCAATCTCAAGATTGAAGAAGATTGTAAACTATGTTCAGCAAATGACATTGCAGATGCTGTTCATCAAATATTAAGCTTCATTAATGGTAGCTAG 1176 0.3929 MERFQEPGPLNSCFTGDHFEVNSFEQQRLVDAESFRFVENEEQFLISSLEDNMPFLQMLQSVESSPQFFPLKEPSFKTLLSLQHMKKQQPWENIAYIPRMDTQIQAAMELESCVTHDILEMQSPVKSESNNELHQHTPSTASCVVEKVMSYDECNHAIIANVNTQSSCHKTQIATRERRKRKRTRPTKSIEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASTIGGAIDFVKELEQLLQSLKAQKMVRKNEEGSNGNNNNGSCSSGLCKPAASLLCSEEAKFGDEVKTEMNSNLGHIEVTLIQTHVNLKIECQRKPGQLIKVIVALEDLRLTILHLNITSTVTSVLYSLNLKIEEDCKLCSANDIADAVHQILSFINGS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0544 391 SMART finulus 201 252 IPR011598 GO:0046983
Lal22g0544 391 Gene3D - 186 271 IPR036638 GO:0046983
Lal22g0544 391 CDD bHLH_AtFAMA_like 198 257 - -
Lal22g0544 391 Coils Coil 243 263 - -
Lal22g0544 391 PANTHER MAX DIMERIZATION, MAD 23 390 - -
Lal22g0544 391 PANTHER TRANSCRIPTION FACTOR BHLH70 23 390 - -
Lal22g0544 391 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 258 IPR036638 GO:0046983
Lal22g0544 391 Pfam Helix-loop-helix DNA-binding domain 196 247 IPR011598 GO:0046983
Lal22g0544 391 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 246 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0544 Lal-Chr22 3663095 3667074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0544 58 385 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 40.957 1.10e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal22g0544 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0544 - - gmx:100789928 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0544 22 3663095 3667074 Lal22g0544 22 3663095 3667074 ECH
Lal22g0544 22 3663095 3667074 Lal6g0731 6 4881231 4883905 LSH
Lal6g0606 6 3891945 3895839 Lal22g0544 22 3663095 3667074 LSH