Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0543 ATGGCTCCATCATATGAAACCAATAAGGGTACTGAAGGCAACAAACTTAAGCAAGAGGGACATGTACATGAAGAAGAAGATGGCATTGTTTTTGCTCTAAAATTATGTAGTTCTGTGGTGTTTCCACTTGCAGTCCGGTCTGCAGTTGAGCTTGGTATCTTCGACATCTTAGCCAAAGCGGGTGTCGAAGGTATCAAACTCTCTGCAGATGACATTGCTACTAAGATTGGTAGCAAGAACCCTGAAGCACCAACAATGCTTGATCGTATTTTGAGGTTGTTGACTAGTCACTCTATGATGTATTGCTCCCTTGTCTATGAAGATGATAAACAAGGAGCTCAAAGGCTATATAGTCTCAGCCCAAACTCCAAATATTTTGTGACAGATGCTGATGGTGTTTCGTTTGGAGCCACCTTGAACTTACCTTTGGACAAGGTCTTCTTGGAAAGCTGGAGCGAAATGAAAGGAGCAATCCTAGAAGGAGGTGTACCATTCAATAGGGTTTATGGCATGCATGCATTTGAGTATCCAACTGTGGATCCAAGGTTCAATGATGTTTTCAACAAAGCTATGGTCAATTGTACAACTATAGTGATGAAAAGAGTTCTTGAATTTTACAAAGGTTTTGAGCACATTAATAAATTGGTAGATGTTGGTGGTGGTCTTGGAATCAATCTCAATCTCATTACTTCCAAATATCCTCATCTCCATGGTATTAATTTTGACTTGCCTCATGTCATAGAACATGCCCCTACCTATGCCGGCGTGGAACACGTGGGAGGAGATATGTTTGAGAGTGTTCCTCATGGAGATGTCATTTTTATGAAGGTGTGGATACTTCACGATTGGAGTGATGAGCATTGCTTGAAGCTGTTGAAGAATTGTCATAAGGCTACCCATGATGATGGAAAAGTGATTGTTGTGGATTCAATTCTCCCTGATATGCCAGAAGCTACTGCTACAGCCAAAAGTGCTTTTCAAGCTGACATCTTAATGATGGCTCAAAACCCAGGAGGGAAAGAACGAACCAAACATGAATTCATGCAATTGGCAATAGAATCTGGATTTTCTGGTATCAGATTCATTGGCTCAATCTCTGGCATCTGGATTATGGAGTTCTTCAAGTAG 1128 0.4105 MAPSYETNKGTEGNKLKQEGHVHEEEDGIVFALKLCSSVVFPLAVRSAVELGIFDILAKAGVEGIKLSADDIATKIGSKNPEAPTMLDRILRLLTSHSMMYCSLVYEDDKQGAQRLYSLSPNSKYFVTDADGVSFGATLNLPLDKVFLESWSEMKGAILEGGVPFNRVYGMHAFEYPTVDPRFNDVFNKAMVNCTTIVMKRVLEFYKGFEHINKLVDVGGGLGINLNLITSKYPHLHGINFDLPHVIEHAPTYAGVEHVGGDMFESVPHGDVIFMKVWILHDWSDEHCLKLLKNCHKATHDDGKVIVVDSILPDMPEATATAKSAFQADILMMAQNPGGKERTKHEFMQLAIESGFSGIRFIGSISGIWIMEFFK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0543 375 PIRSF O-mtase 11 375 IPR016461 GO:0008168
Lal22g0543 375 MobiDBLite consensus disorder prediction 1 20 - -
Lal22g0543 375 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 375 IPR016461 GO:0008168
Lal22g0543 375 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 375 - -
Lal22g0543 375 Gene3D - 9 126 IPR036388 -
Lal22g0543 375 Pfam O-methyltransferase domain 151 357 IPR001077 GO:0008171
Lal22g0543 375 Gene3D Vaccinia Virus protein VP39 127 375 IPR029063 -
Lal22g0543 375 PANTHER O-METHYLTRANSFERASE 1 375 IPR016461 GO:0008168
Lal22g0543 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 133 372 IPR029063 -
Lal22g0543 375 Pfam Dimerisation domain 44 95 IPR012967 GO:0046983
Lal22g0543 375 SUPERFAMILY "Winged helix" DNA-binding domain 24 130 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0543 Lal-Chr22 3644569 3648010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0543 25 375 Monolignol Biosynthesis Gene Families AT5G54160 53.561 1.20e-137 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0543 K13066 - gmx:100789402 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0543 22 3644569 3648010 Lal22g0543 22 3644569 3648010 ECH
Lal6g0605 6 3888361 3890941 Lal22g0543 22 3644569 3648010 LSH