Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0542 ATGTTACCTATTATTGTTGTCTCAACTTTTGTAACTATTAGTTTTGCACTACTTGTGTGCTTGCCTATTTCTTATTCTCTCCAAGAGCAAAGTAAATTATTACAACCAACTTTGATTCCAAATTCATGCAATGAAACATGTGGAAAACTCCATGTTCCTTTTCCATTCTATGTGAACATTTCTTGTGTGTCAATCTCTAATGCTTTCCACCTAACTTGCACAAATTCCTCTGCCCTTTTAATCAAAATTGGATCAGAAAGTTATCCAGTGTTGGAATTCTTCCCAGATGGTTTGTTAGTAGACTTTCCAGGAACATCATCATGCCGCCAGTACAATGACTTGAACTCATTTGGTAACAAGTTTTCTGGAAAAGACCATTTCGGAGTATCGGACGACAATGTTATAGGCCTATATGACTGTGAGGATTCTTCTCTTTGCAAAGCGGATTGCGAAACAGTTGATCTTCCTGGCTGTGATGGAAGCAGTGGTGGTAGCCTTGGTTGCTGTTATCCACTCTCTGATCATAGTATATGGCATGTTGGACAAGGCTTTTCAGTGTTTTCTCAATTTGGATGCAGGGGATTTTCTAGTTGGGCTGTTTTGAGAGGCTCAAATTCAGGAAATCGCGGGGTCAAGTTGGAATGGGCTATTGCTAGAAACTACTCCAATGAAGTTTGTGCAAGGAATGCAGATATGGTGAATGCTACATCAATTGAAGGTGGTGTAAGGTGTGTTTGTCAAGATGGATATGTTGGTGATGGGTTTACTAATGGAACAGGATGCTTGCAGTCCTGTGTCAAGAATGGTCAGGAAGCATATGGAAATGATTGCTACATCAAAAGACATGATCAAAGGAAAATAGTTATCATTGCTGGAATCTTCGGTCCAGTTCTTATTGTTGCCTCCTTGGTTGCACTATTTTATCTTCTTAAAAGACCAGGAAAACAAAGGATGTTAGACACCGAGCAGGCTTATTTCCACAACCTTTCGATCCGAAAGGCTTGCAGATCGCGATTATTTAGCTACCAAGAGCTAGAGGAAGCCACCAATGGCTTCGAAGAGAGCCGGAAACTCATGCAAAGTACTAATGGGACAATGTTTGCTGGAGTTCTTAGAGATGTATCTCATGTAGCCATACACAAGTTAAAATGTGAGAATGAAAGAGACATAATTCAAGTCCTGTCACAAATTGAGATTCTATCTGATGTTGTACATAGGAGCATGGCATGCCTTATTGGATGCTGCATTGACTCTGGCTACACTCCTCTAGTGGTGTATGAATATCCTGCAAATGGTACCTTGAAGGAGCATTTACACCAAAGCAAGGGACATAAACATGGTTTAGATTGGTATAAAAGGTTGAGTATTGCTACAGAAACTGCTTGTGTTGTTGCATTCTTACATTATGAGAATTCTCCTCCCATATTCCACCATAACCTTACATCTAGTTGCATCTTCCTAGATGGTGATTTTTCTGTCAAGATTGCAGGATTTGGGTTACTTAATTCCAATTTTAATCATGATTCTCAGTTGTACACGAATCGCGAATGCTTCCACTTATCCAAAAATGATGTCTATGACATGGGAGTGTTACTTCTTGAGATTATCTCAGGTTCAAATCATCTAGACTTACCAAAATTAGCCTTGCAGAAAATAAAAGATGGAAAGCTAGAAGAAATTGTTGACAAACTTCTTTGCTTTCGCGAGCAACCGTATCATCGCCAAGAACAAATACAAAGAATTGCAGACCTTGCAACAAGATGCTTGCTATTTGGTGCAGATGGAAAGCTAGGAATTATTGATGTTGCAAGAGAGTTAGTACACATAACTAAAGAGTCTATTGATGGAGGAGTTGAGAGGACTAGTAATGGAGGTGACATTCTCAAATTCAAGCCTTCTTCAAATGATATCAATGTGTAA 1920 0.3927 MLPIIVVSTFVTISFALLVCLPISYSLQEQSKLLQPTLIPNSCNETCGKLHVPFPFYVNISCVSISNAFHLTCTNSSALLIKIGSESYPVLEFFPDGLLVDFPGTSSCRQYNDLNSFGNKFSGKDHFGVSDDNVIGLYDCEDSSLCKADCETVDLPGCDGSSGGSLGCCYPLSDHSIWHVGQGFSVFSQFGCRGFSSWAVLRGSNSGNRGVKLEWAIARNYSNEVCARNADMVNATSIEGGVRCVCQDGYVGDGFTNGTGCLQSCVKNGQEAYGNDCYIKRHDQRKIVIIAGIFGPVLIVASLVALFYLLKRPGKQRMLDTEQAYFHNLSIRKACRSRLFSYQELEEATNGFEESRKLMQSTNGTMFAGVLRDVSHVAIHKLKCENERDIIQVLSQIEILSDVVHRSMACLIGCCIDSGYTPLVVYEYPANGTLKEHLHQSKGHKHGLDWYKRLSIATETACVVAFLHYENSPPIFHHNLTSSCIFLDGDFSVKIAGFGLLNSNFNHDSQLYTNRECFHLSKNDVYDMGVLLLEIISGSNHLDLPKLALQKIKDGKLEEIVDKLLCFREQPYHRQEQIQRIADLATRCLLFGADGKLGIIDVARELVHITKESIDGGVERTSNGGDILKFKPSSNDINV 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0542 639 PANTHER OS10G0351500 PROTEIN 52 613 - -
Lal22g0542 639 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 52 613 IPR045274 GO:0007166
Lal22g0542 639 Gene3D Laminin 223 256 - -
Lal22g0542 639 Gene3D Transferase(Phosphotransferase) domain 1 430 621 - -
Lal22g0542 639 Pfam Protein tyrosine and serine/threonine kinase 355 540 IPR001245 GO:0004672|GO:0006468
Lal22g0542 639 Gene3D Phosphorylase Kinase; domain 1 325 428 - -
Lal22g0542 639 ProSiteProfiles Protein kinase domain profile. 352 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal22g0542 639 Pfam Wall-associated receptor kinase galacturonan-binding 43 93 IPR025287 GO:0030247
Lal22g0542 639 SUPERFAMILY Protein kinase-like (PK-like) 335 606 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0542 Lal-Chr22 3630662 3633785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0542 43 609 Receptor kinase-like Gene Family AT2G23450 30.693 6.47e-65 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lal22g0542 PK_Tyr_Ser-Thr 3.6e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0542 - - vra:106760020 925.235