Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0540 ATGGAGGCTGTTATGCAAGGAGGGGTGAAAGGGTTTTCTGATAGCAGAGAAGAAGAAGAGGAAGAAGAAGCAACAACAGAAGAAATCATCACAAGAGAAGAAAGTAGCAGCAGCAGGTTACACCATCAACAAGAAGATTATGCAGCAGCAGCTTCTTCCAACTTCATGAATCATCAACAAAAAAAGCAGATAGATTTCATGGACTTGTCACTTGGAGGGAGCAACAACAAAGATATTATTAACATGAATAATGGTGGTGAAGCCAATTTGCAACAAGGGTCTCAATCCTCATCACAGGCTATTATAACTGAGAAAGAGCACATGTTTGATAAAGTAGTGACACCAAGTGATGTAGGGAAGCTGAACAGGTTGGTGATACCAAAACAGCATGCTGAGAAGTACTTCCCCCTTGATTCAACCTCAAATGAGAAAGGCCTTTTGCTCAATTTTGAAGATAGAAGTGGTAAATTATGGAGGTTCAGGTACTCTTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTCAAAGAAAAGAAGCTTGATGCTGGTGACATTGTCTCATTCCAGCGCGGTGTTGGTGACCTTTACAGGCATAGGTTGTTCATTGATTGGAGGAGAAGGCCTGATCAATATTATGGTGTACCTGATCCTAATTCAGCCACACTCATCACTCCTTTGTTTCTTCCAAATCAGCCACACTTGTCTCAATACTCTATTAGATGGGGTGGTAGATTTTACTCACTGCCTTCACCTCCACCAACACAACAACCAAGGCATCACCATCATGAGCACATTCAGTACCTCAATCACAACAATATGTACCCCTTTCAGCACCTTGGTGGTGGAAGTGGAAGTCATCATTACATGAACAACTACAATGAAATGAGTAATTCAGGATCTGGCTCACTCTATTACCTGAAATCAGCAACACCCTCAATGCAAATAAGTGACCATCAGAGATTTATGACAAGGCAGCAACAACATGAGGGAGGAGGAGGTAATAATATTGCTCCTGTGATCATTGATTCAGTGCCTGTTGCTCATCATCAACAACAACAACAAAACAATGGGGGTTATAAGAGTGGTTCTAGTAATAATAATGGTACAGGAAAAAGGCTAAGGCTATTTGGAGTGAACATGGAATGTGGTTCTTCACCATCAGAAGATCCCAAATGTTGCAGTGTACCACATGCCTCTTCTTCTCTGCCACCACTTTCATCATCAGCAAGGTTTGGAGATAATAAAAGAGGGGAAGCTTCAATCTTTGATTTGGACCCTTCTTTGCAATACCATAGGCAGTGA 1320 0.4189 MEAVMQGGVKGFSDSREEEEEEEATTEEIITREESSSSRLHHQQEDYAAAASSNFMNHQQKKQIDFMDLSLGGSNNKDIINMNNGGEANLQQGSQSSSQAIITEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRSGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGDLYRHRLFIDWRRRPDQYYGVPDPNSATLITPLFLPNQPHLSQYSIRWGGRFYSLPSPPPTQQPRHHHHEHIQYLNHNNMYPFQHLGGGSGSHHYMNNYNEMSNSGSGSLYYLKSATPSMQISDHQRFMTRQQQHEGGGGNNIAPVIIDSVPVAHHQQQQQNNGGYKSGSSNNNGTGKRLRLFGVNMECGSSPSEDPKCCSVPHASSSLPPLSSSARFGDNKRGEASIFDLDPSLQYHRQ 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0540 439 MobiDBLite consensus disorder prediction 1 46 - -
Lal22g0540 439 ProSiteProfiles B3 DNA-binding domain profile. 109 214 IPR003340 GO:0003677
Lal22g0540 439 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 409 IPR044800 GO:0003700
Lal22g0540 439 SMART B3_2 109 214 IPR003340 GO:0003677
Lal22g0540 439 MobiDBLite consensus disorder prediction 393 419 - -
Lal22g0540 439 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 36 409 - -
Lal22g0540 439 Gene3D - 102 219 IPR015300 -
Lal22g0540 439 MobiDBLite consensus disorder prediction 353 377 - -
Lal22g0540 439 SUPERFAMILY DNA-binding pseudobarrel domain 105 214 IPR015300 -
Lal22g0540 439 CDD B3_DNA 107 196 IPR003340 GO:0003677
Lal22g0540 439 Pfam B3 DNA binding domain 109 213 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0540 Lal-Chr22 3605095 3609517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0540 102 391 RAV Transcription Factor Family AT2G46870 48.495 1.26e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal22g0540 B3 1.2e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0540 22 3605095 3609517 Lal22g0540 22 3605095 3609517 ECH
Lal6g0601 6 3855351 3857717 Lal22g0540 22 3605095 3609517 LSH
Lal22g0540 22 3605095 3609517 Lal18g1065 18 13711327 13713479 LSH