Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0531 ATGAGCAACATTAAACAAGTCTTCGCCGGAATCAAAGATTCCGACAAGAACAAAAAAAAACTCCTTTTATCTCTCTTTGCGACTCTTCTTCTTGTTACCACTGTTGTTGCCATTGTTACCGGAGTTAACTCTCACAGAAACTCCAACAACAACAACAATGCTTCCTCCTCTTCACTCTCACTCTCTCACCATTCTCACACTATAATCAAAAGTGCATGCAGCTCCACATTCTACCCTGAACTATGCTTCTCAATTATATCATCTGAACCAGGTGTTACTCACAAAGTTTCCACTCACAAAGATGTCATTGAATTGTCCTTAAACATTACCACAAGAGCCGTTGAACACAACTTCTTCATAGTGGAAAATCTCATAAAGACACAAAATGGTAGTCTCACTCAGAGAGAGAAAACCGCACTCCATGATTGCTTGGAGAACATAGATGAAACACTTGATGAACTTAAAAAAGCTCATGAGGATCTTCAATTTTATCCTAACAAGAAGACACTGTATCAGCATGCTGATGATCTTAAAACTCTTATAAGTTCTGCCATTACTAACCAAATTACTTGCTTGGATGGTTTCTCTCATGAAGATGCTGATAAGAACGTGAGGAAGGTTCTGGAAGAAGGTCAGGTTCATGTGGAACACTTGTGCAGTAATGCTTTGGCTATGACAAAGAACATGACTGATAATGACATAGCCAACTATGAGCAGAATATGTTGGCCGTGGGAAAGAGCAACAGGAAGCTGATGGAGGAGGAGAACGGCGAGGCGGCGACAGTGAAGGCAGACGTGGTGGTTGCAGAAGACGGTAGTGGGGACTTCAAGACGGTGTCGGAGGCGGTGGCTGCTGCTCCTGAGAAGAGCAAGAAGAGGTTTGTTATTAAGATTAAAGAAGGGGTTTATAGAGAGAATGTGGAAGTGGGAAAGAAGAAGACCAATATAATGTTATTGGGTGATAGTAGAACAAATACTATAATCACAGGTAGCAGAAATGTTATTGATGGTAGCACAACCTTTCACTCTGCCACTGTCGCCATAGTTGGTGAACAATTTTTAGCTAAAGATATAACCTTTCAAAACACAGCTGGTCCTTCAAAGCACCAAGCAGTGGCCCTAAGAGTTGGTGCTGATTTCTCAGCCTTCTATAACTGTGACTTCTTAGCATACCAAGACACTCTTTATGTCCACAAAAATCGACAATTCTTCATTAATTGCCTCATAGCAGGAACTGTAGATTTCATCTTTGGTAATTCAGCTGTTGTGTTCCAAGATTGTGATATCCATGCTAGGCTTCCTGATTCAGGCCAAAAGAACATGCTCACAGCACAAGGAAGAGTTGATCCTAACCAAAACACTGGCATTGTAATACAAAAATGTAGGATTGGTGCAACCCATGATTTGGAACCTGTTAAGAAGAATTTCCCTACATATCTTGGGAGGCCTTGGAAGGAATATTCTAGAACTGTGATTATGCAAACAATAATAAGTGATGTGATTGAACCTGTTGGGTGGCATGAGTGGAATGGGAACTTTGCTTTGGATACTTTGGTTTATAGGGAGTATCAGAATACTGGGCCTGGTGCTGGAACTTCTAATAGGGTTGCATGGAAAGGGTTTGAGGTTATTACTAGTGATGTTGAGGCCCAGGCTTTTACTACTGGAACCTTCATTGCGGGTTCTACTTGGTTGGGCTCTACGGGCTTCCCTTTCTCCCTTGACCTGTAA 1731 0.4165 MSNIKQVFAGIKDSDKNKKKLLLSLFATLLLVTTVVAIVTGVNSHRNSNNNNNASSSSLSLSHHSHTIIKSACSSTFYPELCFSIISSEPGVTHKVSTHKDVIELSLNITTRAVEHNFFIVENLIKTQNGSLTQREKTALHDCLENIDETLDELKKAHEDLQFYPNKKTLYQHADDLKTLISSAITNQITCLDGFSHEDADKNVRKVLEEGQVHVEHLCSNALAMTKNMTDNDIANYEQNMLAVGKSNRKLMEEENGEAATVKADVVVAEDGSGDFKTVSEAVAAAPEKSKKRFVIKIKEGVYRENVEVGKKKTNIMLLGDSRTNTIITGSRNVIDGSTTFHSATVAIVGEQFLAKDITFQNTAGPSKHQAVALRVGADFSAFYNCDFLAYQDTLYVHKNRQFFINCLIAGTVDFIFGNSAVVFQDCDIHARLPDSGQKNMLTAQGRVDPNQNTGIVIQKCRIGATHDLEPVKKNFPTYLGRPWKEYSRTVIMQTIISDVIEPVGWHEWNGNFALDTLVYREYQNTGPGAGTSNRVAWKGFEVITSDVEAQAFTTGTFIAGSTWLGSTGFPFSLDL 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0531 576 Pfam Pectinesterase 265 561 IPR000070 GO:0030599|GO:0042545
Lal22g0531 576 PANTHER PECTINESTERASE 16 575 - -
Lal22g0531 576 SUPERFAMILY Pectin lyase-like 260 575 IPR011050 -
Lal22g0531 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 231 IPR035513 -
Lal22g0531 576 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
Lal22g0531 576 PANTHER PECTINESTERASE 16 575 - -
Lal22g0531 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 229 IPR006501 GO:0004857
Lal22g0531 576 Pfam Plant invertase/pectin methylesterase inhibitor 68 225 IPR006501 GO:0004857
Lal22g0531 576 Coils Coil 140 160 - -
Lal22g0531 576 Gene3D - 259 576 IPR012334 -
Lal22g0531 576 CDD PMEI-like_3 71 230 - -
Lal22g0531 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 230 IPR035513 -
Lal22g0531 576 SMART PMEI_2 64 225 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0531 Lal-Chr22 3537531 3541771 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0531 3 576 Carbohydrate Esterase AT3G14310 65.455 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0531 K01051 - gmx:100776623 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1075 18 13816972 13823012 Lal22g0531 22 3537531 3541771 LSH
Lal22g0531 22 3537531 3541771 Lal18g0313 18 2584362 2589020 LSH