Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0530 ATGGATTCAATCAAGTCCTTCAAGGGCTACGGTAAAGTAGATGAGCTGGAGCAGCAATCTTTTCAGAAGAAGACACGTAAGCGTCTTATAATCTTGATAGTCTCATCAATTGTGCTATTAACGGTGATCGTAGCTGCTGTAGCAGGAATCATCATACACAAGCGCAACACTTCATCATCTTCTTCATCTAACTCGATTCCCCAATCCGAGTTAACTCCGGCCGCGTCACTCAAAGCGGTTTGCGACGTGACTCAGTACCCTAACTCATGCTTCTCCGCTATTTCCTCACTCCCGAATTCGAACACCACCGATCCTAAACTTCTCTTCAAACTCTCCCTTCGTGTCGCCATTGATGAACTTTCAAAGCTTTCAAGTTTCATTTCAAAGCTTCGCGACAATGCCAAAACCGATACGTTGCTCCAGAAGGCGATCGATGTGTGCGGAACGGTGTTCGAAGACGCGCTGGATCAACTCAATGATTCGATCTCGTCTGTTGGAAACTCCGGCACCGGGAAAGTGTTACCGCCGGTAGGTGTTAGCAACGTGGAAACTTGGCTCAGCGCTGTGATGACGAACCAGGAGACATGCATCGACGCCGTCGGTGAACTGAACTCCACCGCTTCGCGAGGTGTTCTAACGGAACTTGAAACCGCCACGAGAAACTCCACCGAGTTCGTTAGCAACAGTTTAGCCATTGTCACGAGAATCCTAGGGCTTCTCTCGAGGTTCGACGCGCCGATCCAAAACCGGAGGCTGTTAGGGTTTGAAGAATCGGAGTTTCCGGTATGGATAGGGGCGGCGGAGAGGAGGCTTCTGCAGGAGAACGGGACGGCGTCGGTGGACGTGGTGGTGGCGAAAGATGGGAGCGGACAGTACAAGACGATAGGGGAAGCGTTGAAGTTGGTGGTGAAAAAGAGTTTGAAGAGGTTGGTGGTGCATGTGAAGGAAGGGACTTATGTTGAGAACATTGATTTAGATAAGAATACATGGAATGTGATGATTATCGGTGACGGCAAGGATAAGACCATAGTCTCCGGCAGCCGTAACTTCAAGGACGGCACCCCAACTTTTGAGACCGCCACTTTCGCTGTGAAGGGAAAGGGATTCATTGCCAAAGACATAGGCTTCCACAACACCGCAGGTGCAGAAAAGCACCAGGCTGTGGCATTGCGATCTGGTTCGGATCAATCTGTGTTCTACAGGTGCTCATTTGTGGGCTTCCAGGATACTCTCTATGCTCATTCCAACCGCCAATTCTACCGTGACTGTGACATTACAGGCACTATTGACTTCATATTCGGCAATGCAGCTGTTGTGTTCCAAAATTGCAAAATCATGCCTAGGCAGCCTATGTCAAACCAGTTCAACACCATCACAGCACAGGGCAAGAAGGACCCCAACCAGAACACAGGAATTGTAATTCAGAAATCAACAATCACTACCCTTGATAATGACATTCTCACAGCTCCTACATACCTTGGTAGGCCTTGGAAAGATTTCTCCACCACTATTATCATGCAAACTGATATTGGGTCATTCTTGAAACCAGTTGGTTGGATTAGTTGGGTCCCCAATGTGGATCCTGTAAGTACCATATCTTATGCCGAATACCAGAATAGTGGGCCAGGAGCAGATGTGTCCCAGAGGGTTAAATGGGCTGGTTATAAGCCCACCCTCACAGATGATGAGGCAGTGAAGTTCACAGTGCAGACCTTTATCCAAGGCCCAGAGTGGTTGCCAGATACTACTGTGGAGTTTGACTCCACCTTAAATCTTTATAATACTAGTGTATAA 1794 0.4822 MDSIKSFKGYGKVDELEQQSFQKKTRKRLIILIVSSIVLLTVIVAAVAGIIIHKRNTSSSSSSNSIPQSELTPAASLKAVCDVTQYPNSCFSAISSLPNSNTTDPKLLFKLSLRVAIDELSKLSSFISKLRDNAKTDTLLQKAIDVCGTVFEDALDQLNDSISSVGNSGTGKVLPPVGVSNVETWLSAVMTNQETCIDAVGELNSTASRGVLTELETATRNSTEFVSNSLAIVTRILGLLSRFDAPIQNRRLLGFEESEFPVWIGAAERRLLQENGTASVDVVVAKDGSGQYKTIGEALKLVVKKSLKRLVVHVKEGTYVENIDLDKNTWNVMIIGDGKDKTIVSGSRNFKDGTPTFETATFAVKGKGFIAKDIGFHNTAGAEKHQAVALRSGSDQSVFYRCSFVGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCKIMPRQPMSNQFNTITAQGKKDPNQNTGIVIQKSTITTLDNDILTAPTYLGRPWKDFSTTIIMQTDIGSFLKPVGWISWVPNVDPVSTISYAEYQNSGPGADVSQRVKWAGYKPTLTDDEAVKFTVQTFIQGPEWLPDTTVEFDSTLNLYNTSV 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0530 597 Gene3D - 276 590 IPR012334 -
Lal22g0530 597 Pfam Plant invertase/pectin methylesterase inhibitor 77 232 IPR006501 GO:0004857
Lal22g0530 597 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 237 IPR035513 -
Lal22g0530 597 ProSitePatterns Pectinesterase signature 1. 306 325 IPR018040 -
Lal22g0530 597 PANTHER PECTINESTERASE 1-RELATED 8 587 - -
Lal22g0530 597 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 237 IPR035513 -
Lal22g0530 597 PANTHER PECTINESTERASE 8 587 - -
Lal22g0530 597 TIGRFAM PME_inhib: pectinesterase inhibitor domain 60 234 IPR006501 GO:0004857
Lal22g0530 597 Pfam Pectinesterase 281 575 IPR000070 GO:0030599|GO:0042545
Lal22g0530 597 SMART PMEI_2 72 232 IPR006501 GO:0004857
Lal22g0530 597 CDD PMEI-like_3 79 236 - -
Lal22g0530 597 SUPERFAMILY Pectin lyase-like 278 587 IPR011050 -
Lal22g0530 597 ProSitePatterns Pectinesterase signature 2. 425 434 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0530 Lal-Chr22 3523891 3536147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0530 1 584 Carbohydrate Esterase AT1G53840 58.277 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0530 - - lang:109360530 1009.59