Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0523 ATGTTTCAGTTTCATCCTCAAGCAGCTACCAAACAGACTTGTACTCTGCTTGCTGTCACTTGTGGCACAAGTTTTGAGCAGCAGAAGCCTTTTCAGAATCACCACAATTACCCTTTCCCTGAGTTAGTTTCTATGGGGCGTCTCGAGGTTCAAACTTTGAGCAATCCAGAAAAGGAACAGTTTTGTAAAATTCTTGAGTCGTACCAACCAAATATTGTTTACTTGCAAGGAGAACAGCTAGCGAATGGTAAAGTTGGTTCGCTGGTTTGGCAAGGTGTGGAATTGTCCACCCCTGAAGCTATAACAGAGCTCTTTGATCCCACATTGCCGACTGCTATCATAGTTGACATTGTAGGTATGGTTTATTTAGAAATCCCAAATGGAAAAAGTTTTGCAGAGGCTCTTCATTTTAAGGGAATCCCATATGTGATATATTGGAGGAATATTTTTTCTTGTTATGCTGCCTGCCATTTTTGCCAAGCATTTCTTTCAGTGGTGCAGAGTTCATCTACAAATACATGGGATGCTTTCCACCTAGCTCTTGCCTCTTTTGAGATTTATTGCGGTCAAAACAATCGAGTACTCCCTGATGACAGCCATTATACTGATTGTGAGATGGGCCCCCACCTTCTTGGCAACTGTCTCCGAATTAATGTTGACCCTCCTGAGATGGGTGAAGAAGACAATGAAGAAAAATCCTCAGGCAGTCTTCCTGATATAACGATACATGATGATGAAGTGAACTCGAGATTTCTCATCTGCGGTGCACCTTCCACTGTTGATGAGTCATTGATGAGATCATTGGAGGACGGACTCAGAGCTCTCTTAACTATTGAAATACGTGGTTGCAAGCTCCATGGCAAGTTTAGTGCTCCCCCACCACCTCTTCAGGCAGCCGCTTTTTCTCGTGGAGTTGTGACCATGCGATGCGATATATCAACCTGTAGTTCTGCACACATTTCACTTCTGGTATCAGGCAGTGCACAAACTTTGTTCAGTGATCAGCTCCTGGAGAGTCATATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCATGTACACCTCAACAAAGTGGAGAACAAACAGAATATCTATGAACCTCACAGATCTGCAGCAATTGCTTGTGGAGCAATAGTATTTGAAATTAGCATGAAGCTTCCTCAATGGGCTTTGCAGATTTTGAGACAGCTAGCACCTGATGTTTCTTATCGAAGTTTAGTTGTACTTGGCATTGCTAGTATTCAGGGGCTGCCTATAGCTTCTTTTGAGAAAGATGATGCTGAGCGCTTACTTTTCTTCTATCAAAGCTGTGAAAAAGATAGCTACACGGATAATATAGTTTTTAGCAACCCCCCTGGTTGGTTGAAACCACCCCCTCCTATTAGAAAGAGGTGTGAACCAAGCCAAGGAGATATCCTGGGCCCTAGTGATGGTTTCTTTGCAGGGGAAGGTGCTGTTCCGAAAGTAGATGAGGAGGAAAAGGATAGAAAAATGGTGAATGGGAGTAGCACACCCATAACTCCAGCTAGGCAAAGATTAAAAGTATCTGCAATGAGGCCTATTCCTCATGTACATCGCCATAGGCTGACACCTTTTTGTGGGCCTTTTGAGACAAATGGTTTTGATGGTGCCCAAGTTGAGGCTAATTTGCCTCTTGTTGCACCTACAAAGCGCACTAGTATTGGATCAACTTCTGCAACACACAGAAAATCGTTTGCAGCCTCAGCTCAGTCTAAGCAGGTTATTTCATTAAACCCACTGCCTTTGAAGAAACATGATTGTGGCAGAGGCCCAGTGCAGACTTGCTCTGAGGAGGAATTTCTTAAAGATGTTATGGAGTTTTTGATTCTTTGTGGACATAGTCGATTGATTCCTCAGGGAGGGCTAACTGAGTTCCCTGATGCTATACTCAACGGAAAACGCCTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTCCATGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTCTCAAAGATGCGCAATTACACATCCACCAATAGAATGACCGGTGTTGGAAATACGCTCAAAAGACATTATGAAACCTACCTTTTAGAATATGAATTAGCACATGATGATGTGGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCTGGGGATTGGGTGAATTGTGGAATATGTGGTGAGTGGGCTCATTTTGGCTGTGATAGAAGGCAGGGCCTTGGTGCGTTTAAGGATTATGCAAAAACTGATGGACTAGATTATATATGTCCTCATTGTAGTGTTACAAATTTCAAGAAACAAAGTATTGCTAATGGGTATTCTCAAGGGTCAATGTCGTCGCGACCCCTTTCATAG 2367 0.4297 MFQFHPQAATKQTCTLLAVTCGTSFEQQKPFQNHHNYPFPELVSMGRLEVQTLSNPEKEQFCKILESYQPNIVYLQGEQLANGKVGSLVWQGVELSTPEAITELFDPTLPTAIIVDIVGMVYLEIPNGKSFAEALHFKGIPYVIYWRNIFSCYAACHFCQAFLSVVQSSSTNTWDAFHLALASFEIYCGQNNRVLPDDSHYTDCEMGPHLLGNCLRINVDPPEMGEEDNEEKSSGSLPDITIHDDEVNSRFLICGAPSTVDESLMRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAAAFSRGVVTMRCDISTCSSAHISLLVSGSAQTLFSDQLLESHIKNEIIEKSQLVHVHLNKVENKQNIYEPHRSAAIACGAIVFEISMKLPQWALQILRQLAPDVSYRSLVVLGIASIQGLPIASFEKDDAERLLFFYQSCEKDSYTDNIVFSNPPGWLKPPPPIRKRCEPSQGDILGPSDGFFAGEGAVPKVDEEEKDRKMVNGSSTPITPARQRLKVSAMRPIPHVHRHRLTPFCGPFETNGFDGAQVEANLPLVAPTKRTSIGSTSATHRKSFAASAQSKQVISLNPLPLKKHDCGRGPVQTCSEEEFLKDVMEFLILCGHSRLIPQGGLTEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTSTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLDYICPHCSVTNFKKQSIANGYSQGSMSSRPLS 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0523 788 ProSiteProfiles ARID domain profile. 602 706 IPR001606 GO:0003677
Lal22g0523 788 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 773 - -
Lal22g0523 788 CDD PHD_ARID4_like 712 763 - -
Lal22g0523 788 Pfam ARID/BRIGHT DNA binding domain 605 702 IPR001606 GO:0003677
Lal22g0523 788 Gene3D - 599 705 IPR036431 GO:0003677
Lal22g0523 788 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 773 IPR042293 -
Lal22g0523 788 SUPERFAMILY ARID-like 602 717 IPR036431 GO:0003677
Lal22g0523 788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 706 769 IPR013083 -
Lal22g0523 788 SUPERFAMILY FYVE/PHD zinc finger 705 767 IPR011011 -
Lal22g0523 788 SMART ARID_2 599 702 - -
Lal22g0523 788 CDD ARID 604 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0523 Lal-Chr22 3474329 3482962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0523 4 772 ARID Transcription Factor Family AT3G43240 58.194 0.0 896
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal22g0523 ARID 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0523 - - gmx:100820590 1341.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0523 22 3474329 3482962 Lal18g1079 18 13850656 13861222 LSH