Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0521 ATGGCAGGAACCTCATTGCCCTCTAGGCTATCTTTTCTTGATGATTATCTCTTAGTTGATGATTTCTACTTTTCAGCCCTTCATGATACAGATGACTTATTCCCAATTTCTGATGAGAAATATGCAGAAGAGTTACAACTACAAGAGGCTCTTTATTCCTCGGTCATATCCAGAAATAGAGTTAAGAATGAGGTTAAGAATGAAGTTATGAAAATGGCTGTGAAAGTTGAAGCTGACACTCACTTGATGGCCCCTTTAGTCAAGGTGAAAGAGGAAAAGGTTGATCTCTTTTTCTGTACCATTTGCATGGATTCCAAACCTGCTGAAGAAATATTCAGGAGCCAAAACTGTTCTCACACTTTTTGTGGTTATTGTATCACAAAATATGTGGCTGCAAAGATTCAGGAAAATATTTCTATGGTAAAATGCCCTGACCCTAAATGCCGTGGTGTTTTAGACCCTCAAAGTTGTCGTTCAATCATTCCAAAAGATGTGTTTGATCGATGGGAAGATGCGCTTTGTGATAATTTAGTACTTGGTTCACAGAAATTTTATTGCCCCTTTAAGGATTGTTCTGCTATGTTGATTGATGATGGAATGAAGAATGTGACTTCTTCCGAGTGTCCACATTGTAATAGAATGTTCTGTGCTCAGTGCAAGGTTTCTTGGCATGCTGGGTTAGATTGTAGTGAGTTTCAGAACTTAAAGGATGGTGTGCAAAAGAAGGAAGATATAATGGTACTGGAACTTGCTATGAACAATCGCTGGAGAAGATGCTCCAAGTGCAAATTTTTTGTTGAAAAGAATGAAGGATGTGCTCACATTTCTTGCAGGTGCGGTAATCAGTTTTGTTATACTTGTGGAACCCCTTGGAGTCAGAACCATAATTGTCTACCTCAATAG 903 0.3865 MAGTSLPSRLSFLDDYLLVDDFYFSALHDTDDLFPISDEKYAEELQLQEALYSSVISRNRVKNEVKNEVMKMAVKVEADTHLMAPLVKVKEEKVDLFFCTICMDSKPAEEIFRSQNCSHTFCGYCITKYVAAKIQENISMVKCPDPKCRGVLDPQSCRSIIPKDVFDRWEDALCDNLVLGSQKFYCPFKDCSAMLIDDGMKNVTSSECPHCNRMFCAQCKVSWHAGLDCSEFQNLKDGVQKKEDIMVLELAMNNRWRRCSKCKFFVEKNEGCAHISCRCGNQFCYTCGTPWSQNHNCLPQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0521 300 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 19 299 - -
Lal22g0521 300 SUPERFAMILY RING/U-box 242 297 - -
Lal22g0521 300 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 19 299 IPR031127 GO:0004842|GO:0016567
Lal22g0521 300 Pfam IBR domain, a half RING-finger domain 170 229 IPR002867 -
Lal22g0521 300 Pfam IBR domain, a half RING-finger domain 251 297 IPR002867 -
Lal22g0521 300 ProSiteProfiles TRIAD supradomain profile. 95 300 IPR044066 -
Lal22g0521 300 SMART ibrneu5 240 297 IPR002867 -
Lal22g0521 300 SMART ibrneu5 167 229 IPR002867 -
Lal22g0521 300 Gene3D - 184 230 - -
Lal22g0521 300 Gene3D - 231 299 - -
Lal22g0521 300 ProSiteProfiles Zinc finger RING-type profile. 99 147 IPR001841 -
Lal22g0521 300 SUPERFAMILY RING/U-box 172 234 - -
Lal22g0521 300 SUPERFAMILY RING/U-box 95 176 - -
Lal22g0521 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 177 IPR013083 -
Lal22g0521 300 ProSitePatterns Zinc finger RING-type signature. 117 126 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0521 Lal-Chr22 3464123 3465138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0521 99 290 C3H Transcription Factor Family AT2G19610 28.571 6.00e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0521 K11975 - gmx:100815626 377.096