Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0520 ATGTCTTCCTCTTCCAATAACACAACCACCACAAAATGCAACAAAAGGAAGATTAAAATAAAGAAAGTTGAACCAAACAACAAATGCCATGTAACCTTCACCAAACGCAAACTAGGGCTTTTCAACAAAGTCACTGAACTTTCCATTCTATGCCAAGCTGAAACTGCATTGATCCTTTCCTCTCAACAAGGTAAGCTCTACACTTGCGGCTACCCTGACCCCGACGCGGTCATCCGTCGCTTCCTCACCAATGGGACTCAGGTGCAACGTGGCCGCACCGGGAAAAGGCAGCAGCAAGAATTGGTTGAAACCCTAAGACTTGAATATGAGGAAACTCATAACATGTTGCAACAAGAGAAGAAGAAACTGGATGAGATCAAAGAGGCACAGAATGGTTGTTTGGATTTTCCTGCTTGGTGGAATAAGGATATTGAAAAGATGGGTTTGGAGGAACTTGAGAATTTCATGGCTTCCTTAGAGATATTGAAGCTAAACCTTGTTGCTACAGCTGAAGCAAGGAAGTTCAATTCAAGGTCACCTATGATCCCATCTCCAATGGATCCAAGAGCAATGTTTTCAAACTTTAATGGTTGTTTCAGTGGAAATCAACAAGCATGGAATTCGATGAATGGTAGCAGCAGCAGTAGTAGAAACCCATTGGTTACAAAATTTGATCTTGGTCGTTATTAA 690 0.4188 MSSSSNNTTTTKCNKRKIKIKKVEPNNKCHVTFTKRKLGLFNKVTELSILCQAETALILSSQQGKLYTCGYPDPDAVIRRFLTNGTQVQRGRTGKRQQQELVETLRLEYEETHNMLQQEKKKLDEIKEAQNGCLDFPAWWNKDIEKMGLEELENFMASLEILKLNLVATAEARKFNSRSPMIPSPMDPRAMFSNFNGCFSGNQQAWNSMNGSSSSSRNPLVTKFDLGRY 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0520 229 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 7 180 - -
Lal22g0520 229 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Lal22g0520 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 68 IPR002100 GO:0003677|GO:0046983
Lal22g0520 229 PANTHER MADS BOX PROTEIN 7 180 - -
Lal22g0520 229 Gene3D - 26 108 IPR036879 GO:0003677|GO:0046983
Lal22g0520 229 Coils Coil 102 129 - -
Lal22g0520 229 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Lal22g0520 229 SUPERFAMILY SRF-like 14 83 IPR036879 GO:0003677|GO:0046983
Lal22g0520 229 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Lal22g0520 229 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Lal22g0520 229 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0520 Lal-Chr22 3461460 3462149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0520 15 175 Type I MADS-box Gene Family AT5G60440 33.939 9.49e-25 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal22g0520 SRF-TF 1.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0520 - - lang:109356483 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0583 6 3744530 3744985 Lal22g0520 22 3461460 3462149 LSH
Lal22g0520 22 3461460 3462149 Lal18g1081 18 13873414 13874067 LSH