Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0518 ATGGCCACCACCGGTAACGCCACCTCAGCCCCACGCCAGCTGTCTCAGAAGGAACTCGATATCCAGTTGATGTTGGCGGCGGAGGTCCATCTCGGCACCAAAAACTGTGATTTCCAAATGGAGCGCTACATCTTCAAGCGCCGATTCGACGGGATTTACATTATTAATTTGGGAAAGACATGGGAGAAGCTTCAACTTGCCGCGAGGGTTATTGTTGGCATTGAGAACCCTCAGGACATCATTGTCCAGTCTGCCAGACCTTATGGTCAGAGAGCAGTTCTCAAGTTTGCTCAGTACACTGGTGCCCATGCTATTGCTGGAAGGCACACTCCTGGAACATTCACCAATCAGCTCCAGACTTCATTCAGTGAGCCACGACTTCTCATCCTGACTGATCCAAGAACTGATCATCAGCCCATTAAGGAAGGTGCTCTTGGAAATATTCCAACAATTGCTTTCTGTGACACCGATTCTCCTATGAGGTATGTTGACATTGGAATTCCTGCCAACAATAAGGGAAAGCACAGCATTGGTTGTCTCTTTTGGCTTCTTGCAAGGATGGTATTACAGATGCGTGGAACTATTCGCCCTGGGCTCAAGTGGGATGTGATGGTTGACTTGTTCTTCTATAGAGAACCCGAGGAAGCCAAGCAACAAGAGGAAGATGAAACCCCAGCACTAGATTACTCCGCCAATCCAGAGTACAATGCAGGTTCTCTTGCTGCTGATGGCCAGTGGCCCACTGCTATTGATCAGTCTTGGACTGATGCCGCTCCACAACCTATTGCAGCAGTTCCTGTTGTTGGCTGGGTTGCCCCTGATGCTGCTCCAGTTGCAGGAGACTGGGGTGAAGCTGTTCCAGCACCACAAATTCCGGCCCCAGCTGTTGACTCAATTCAAGCATCTGGCTGGGAATAG 918 0.4989 MATTGNATSAPRQLSQKELDIQLMLAAEVHLGTKNCDFQMERYIFKRRFDGIYIINLGKTWEKLQLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEDETPALDYSANPEYNAGSLAADGQWPTAIDQSWTDAAPQPIAAVPVVGWVAPDAAPVAGDWGEAVPAPQIPAPAVDSIQASGWE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0518 305 MobiDBLite consensus disorder prediction 286 305 - -
Lal22g0518 305 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal22g0518 305 TIGRFAM uS2_euk_arch: ribosomal protein uS2 17 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lal22g0518 305 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal22g0518 305 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal22g0518 305 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal22g0518 305 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal22g0518 305 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal22g0518 305 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal22g0518 305 PANTHER 40S RIBOSOMAL PROTEIN SA 6 280 - -
Lal22g0518 305 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Lal22g0518 305 ProSitePatterns Ribosomal protein S2 signature 1. 21 32 IPR018130 GO:0003735|GO:0005840|GO:0006412
Lal22g0518 305 Gene3D - 20 225 - -
Lal22g0518 305 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal22g0518 305 Pfam Ribosomal protein S2 123 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lal22g0518 305 SUPERFAMILY Ribosomal protein S2 16 206 IPR023591 -
Lal22g0518 305 Hamap 40S ribosomal protein SA [rps-0]. 8 249 IPR027498 GO:0003735|GO:0006412|GO:0015935
Lal22g0518 305 PANTHER 40S RIBOSOMAL PROTEIN SA 6 280 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0518 Lal-Chr22 3436860 3439417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0518 1 305 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 70.358 8.51e-151 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0518 K02998 - gmx:548014 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0518 22 3436860 3439417 Lal22g0518 22 3436860 3439417 ECH
Lal6g0575 6 3694615 3697165 Lal22g0518 22 3436860 3439417 LSH
Lal22g0518 22 3436860 3439417 Lal18g0319 18 2675654 2678444 LSH