Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0516 ATGGCTAATGAAGGAGATAAAGACAATGACTTATATGGTATCCTAGGATTGAATAAGGACTGCACTGAATCAGAGCTCAGAATTGCTTATAAGAAACTTGCACTGAAATGGCACCCAGATCGTTGTTCAGCTTCTGGGAATTCAATGTTTGTTGAAGAAGCAAAGAAGAAATTTCAGGCAATCCAACAAGCTTATTCTGTTTTATCTGACGCAAACAAGAGGTTAATGTACGACATAGGAGTCTATGACAGTGATGATGACGAAAATGGCATGGGGGATTTCTTGAACGAAATGGTAACAATGATGAGCCAAACAAAACCAAACGAAAAAGGAGGGGAAAGCTTTGAGGAATTGCAACAGTTGTTTGAAGATATGTTTCAAGATGATATTAGATCAGATAGAAGAACCTTTCACAATACTGCTAGTAACACTACTTCATCTACATGCATGACTTTTAGTGAAACTTCTAGTTCAAATAAACGCAATTCCTTTGACATGAATTTTGGGATGGTAGATGATTCTTTTGAATTTAATGGTGGCTACCCCAACTTCTGTTTAGGGGTGAAGCACATTCAAGATATCAAGAAAGGAAAGAGAGGAATCCAAGAAGAAGGAGGTAAGAGTAGAGATAGAAGTGTTAGAAAGCAAAAAATCTCACATGGCCATGATATTTCTTCTGATGACTTCCCTGGCATTTCTGCT 702 0.3761 MANEGDKDNDLYGILGLNKDCTESELRIAYKKLALKWHPDRCSASGNSMFVEEAKKKFQAIQQAYSVLSDANKRLMYDIGVYDSDDDENGMGDFLNEMVTMMSQTKPNEKGGESFEELQQLFEDMFQDDIRSDRRTFHNTASNTTSSTCMTFSETSSSNKRNSFDMNFGMVDDSFEFNGGYPNFCLGVKHIQDIKKGKRGIQEEGGKSRDRSVRKQKISHGHDISSDDFPGISA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0516 234 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Lal22g0516 234 PRINTS DnaJ domain signature 12 30 IPR001623 -
Lal22g0516 234 PRINTS DnaJ domain signature 30 45 IPR001623 -
Lal22g0516 234 PRINTS DnaJ domain signature 53 73 IPR001623 -
Lal22g0516 234 PRINTS DnaJ domain signature 73 92 IPR001623 -
Lal22g0516 234 SMART dnaj_3 9 73 IPR001623 -
Lal22g0516 234 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Lal22g0516 234 Pfam DnaJ domain 10 78 IPR001623 -
Lal22g0516 234 MobiDBLite consensus disorder prediction 139 158 - -
Lal22g0516 234 Gene3D DnaJ domain 7 138 IPR036869 -
Lal22g0516 234 PANTHER PUTATIVE, EXPRESSED-RELATED 1 228 - -
Lal22g0516 234 CDD DnaJ 10 70 IPR001623 -
Lal22g0516 234 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 228 - -
Lal22g0516 234 SUPERFAMILY Chaperone J-domain 8 80 IPR036869 -
Lal22g0516 234 MobiDBLite consensus disorder prediction 196 234 - -
Lal22g0516 234 MobiDBLite consensus disorder prediction 196 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0516 Lal-Chr22 3419017 3422114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0516 12 78 C2H2 Transcription Factor Family AT1G74250 41.176 7.75e-10 56.6