Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0509 ATGCAGAATTACAGGCTGAAGCAGCAGCAACAACAACAAGCTCTGATGCAACAAGCACTCCTTCAACAACAATCTCTCTATCACCCTGCTCTTCTAGCTCCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGACCCAAGTACTTGCCGCAGTGTGTTTGTTGGGAATATCCATACTCAGGTAACCGAGCCACTTTTGCAAGAAGTTTTCGCAGGTACCGGCCTGGTTGAAGGTTGTAAACTTATTAGAAAGGAGAAGTCATCCTATGGATTCATTCACTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAACTGGGCTTATGCTAGTGGTCAGAGGGAGGATACATCAGGTCATTTCAACATATTTGTTGGTGATTTGAGTCCCGAGATCACTGATGCTACGTTGTTTGCATGCTTTTCTGTTTACCCCAGTTGCTCAGATGCGAGGGTTATGTGGGATCAAAACACTGGGCGTTCAAGGGGGTTTGGATTTGTTTCATTCCGAAATCAACAGGATGCTCAAAGTGCCATAAATGTTTTGACTGGCAAGTGGCTTGGAAGCAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGTGGCAACGAAGATAAGCCAAACTTGGACACCAAAACTGTGGTGGAACTAACAAATGGATCATCTGAAGACGGTAAAGAAACATCAAACAATGACGCTCCTGAGAACAATGCTCAATATACTACTGTCTATGTAGGTAACCTTGCTTCAGAGGTAACACAACTTAATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTGATAGAGGAGGTTCGCGTTCAGCATGATAAAGGATTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATACCCAGTCTATCCTATGCGGCAAACCAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCAACTCTGCCAGGCTTCTCCGCGACGGATCTTTTTGCTTACGAACGACAACTAGCAATGAGCAAGATGGGTGGTGGCCATGCTTTGAATCCTTTATTGCATCCTCAAGTACAACATCCTCTTAAACAGGCAGCAATTGGAGCTAGCCAGATATATGATGGTGGGTTCCAGAATGTTGCTGCTGCACAGCAAATGATGTACTACCAGTAA 1266 0.4581 MQNYRLKQQQQQQALMQQALLQQQSLYHPALLAPPQIEPIPSGNLPPGFDPSTCRSVFVGNIHTQVTEPLLQEVFAGTGLVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEITDATLFACFSVYPSCSDARVMWDQNTGRSRGFGFVSFRNQQDAQSAINVLTGKWLGSRQIRCNWATKGAGGNEDKPNLDTKTVVELTNGSSEDGKETSNNDAPENNAQYTTVYVGNLASEVTQLNLHHHFHSLGAGVIEEVRVQHDKGFGFVRYSTHAEAALAIQMGNTQSILCGKPIKCSWGSKPTPPGTASNPLPPPAAATLPGFSATDLFAYERQLAMSKMGGGHALNPLLHPQVQHPLKQAAIGASQIYDGGFQNVAAAQQMMYYQ 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0509 421 SUPERFAMILY RNA-binding domain, RBD 250 340 IPR035979 GO:0003676
Lal22g0509 421 SUPERFAMILY RNA-binding domain, RBD 53 219 IPR035979 GO:0003676
Lal22g0509 421 Gene3D - 238 340 IPR012677 -
Lal22g0509 421 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 10 403 - -
Lal22g0509 421 CDD RRM1_TIA1_like 57 127 - -
Lal22g0509 421 CDD RRM2_PUB1 141 215 - -
Lal22g0509 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 327 IPR000504 GO:0003723
Lal22g0509 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Lal22g0509 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Lal22g0509 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 10 403 - -
Lal22g0509 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 336 IPR000504 GO:0003723
Lal22g0509 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Lal22g0509 421 CDD RRM3_TIA1_like 261 336 - -
Lal22g0509 421 SMART rrm1_1 56 125 IPR000504 GO:0003723
Lal22g0509 421 SMART rrm1_1 262 332 IPR000504 GO:0003723
Lal22g0509 421 SMART rrm1_1 141 214 IPR000504 GO:0003723
Lal22g0509 421 Gene3D - 138 228 IPR012677 -
Lal22g0509 421 Gene3D - 1 137 IPR012677 -
Lal22g0509 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0509 Lal-Chr22 3377709 3381679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0509 56 336 Eukaryotic Initiation Factors Gene Family AT2G23350 30.479 4.51e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0509 K13201 - gmx:100781227 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0565 6 3631998 3637371 Lal22g0509 22 3377709 3381679 LSH