Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0508 ATGACAAGTTTCCCGGATACGGTGGTGGATCGCCGGAGGTCCGGCAAGGCACCGGAAAATTTCAATTTCTCACAAACTTGTAGCCTTCTGAGTCACTTCTTGAAAGGAAAACGCAGCTCTGATGTTTCTACGTTTGGAGTTGGTAGAAAAATTGAGCCTAAGGCAAATATGAAGGATTTGTTATCTAACATGCAAAGTTCAGAAGGGGCTTTGGATTTACTTCCCCAGCTTGTGGAAAATCCTTGCATTAACAAGTCTAATGATAGGACACCAGATCCTGAAACTCCTCAATTGACAATATTCTATGGTGGAAAAATGCTAGTATTTGATGCTTTTCTACCTGGGAAAGCCACAGAAGTAATGGAATTAGCCACGAAGTTAGCTTCTGATAATCCTAGCATCAAAGAAAGTTCCCCTACTGCTTCTGTTGGTCCAGATATGAGGTATCCAAGGAGAGCTTCACTTGTAAAATTCCTAGAGAAAAGGAAAGAAAGGGTCATTGCTAAAGGGCCTTACCAAATTATGAACCACAACCCAACCATGAATGATGGAAACAGTTCAGAAGTTGGTAAATCTGAAGAGCAGAGTTCCAAACAATTAGACCTTAACTTGTAG 615 0.4114 MTSFPDTVVDRRRSGKAPENFNFSQTCSLLSHFLKGKRSSDVSTFGVGRKIEPKANMKDLLSNMQSSEGALDLLPQLVENPCINKSNDRTPDPETPQLTIFYGGKMLVFDAFLPGKATEVMELATKLASDNPSIKESSPTASVGPDMRYPRRASLVKFLEKRKERVIAKGPYQIMNHNPTMNDGNSSEVGKSEEQSSKQLDLNL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0508 204 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 144 194 - -
Lal22g0508 204 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 8 143 - -
Lal22g0508 204 MobiDBLite consensus disorder prediction 169 204 - -
Lal22g0508 204 MobiDBLite consensus disorder prediction 175 204 - -
Lal22g0508 204 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 8 143 IPR040390 -
Lal22g0508 204 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 144 194 IPR040390 -
Lal22g0508 204 ProSiteProfiles Tify domain profile. 91 126 IPR010399 -
Lal22g0508 204 SMART tify_2 91 126 IPR010399 -
Lal22g0508 204 Pfam tify domain 93 124 IPR010399 -
Lal22g0508 204 Pfam Jas motif 151 173 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0508 Lal-Chr22 3373319 3376131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0508 8 194 Tify Gene Family AT1G19180 28.968 5.45e-16 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lal22g0508 tify 9.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0508 K13464 - gmx:100778559 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0564 6 3628636 3630836 Lal22g0508 22 3373319 3376131 LSH
Lal22g0508 22 3373319 3376131 Lal18g1098 18 14019601 14022526 LSH