Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0501 ATGGATACTGAGGGTGGAACCAGCGATGCTGATAATTTGGGACATGCTGATCAGGATCGGTGTTTGGAAATGGGAAGTGTAAATAATGGGGTAGCAATTGAAGATGGGAATGAGGTTCAGTGTTTTAAGTATGGAGCTGTGAATAGTAGGGTGGCAATTGAAGATGGGAATGGGATTCAGTGCTTGAAGAATGAAACTGTAAATAATGGAGTGGTAATTGCTGACGGGAATAAGGTCCGGTGGTTGAAGAATGAAACTTTGAATAATGGAATGGTAATTGCTGATGTTGTTGAAGGTCAAGTGGTTCGCTGCTTAAAGAATAAAATCGTAAATAATGGAGTGGCAATTACTGATGGGAATTGTGCTGTTGAAGGCAAAGAGGTTGGGTGTTCGAAGAATGAAACTATAAATAATGGAGTAGTGATTGCTGATGGGAATGGTGTTTCTAAAGGGAAAGAGGTTCGGTGCTTGAAGAACCGAACTGTTAGTAATGGAGTGGAAATTGCTAATGGGAAAGGTGTTGCTGAAGGGGACTCCAGTGGAGTTAAATATTTGCTAACTTATAAGCGGCGTAAGCATGTAAAATCGAGTTCTGAAAGCAAAATTCAGGAAGGGAACAAAGGATGCGCGCAAGCTGCAAGTCACCTATCAGACCAGGGTGTGAAAAAACCATGTGCTATGGGCAATACTTCAAAAGATTATTCACATGGACATTGGGGAAATGTTCTGCTAAACCATTTACATCATTCATTAGGTGGTAGCAATGGCAGCATAGAGGGGTGCATAAGGGAATCACTCATGGACTATCCCAAATTTTGTTATGCCCCTAGAGTTACGGAAACATTTAAAATTGACAAAGATGATCAAGAATGCTCTTCCCAATCTGAGCAGTTGTCCCACAGATCACACAATGAAACTAATGGGCATGATATCATGCATAGTGGATGTTCTAGTGAATCAGATGCCTGTGGTGGTACTGAGAGGTGTCATCGCGTGTTATGTAATATCTTAACCTCTGAAAAATTCAGTTCCTTATGTAAGGTGCTACTTGAAAATTTCCAAGGAATCAAACCTCAACGTATATTTGACTTTAGTGTCATAAACACAAGGATGAAAGAACAAGCTTATGAACATGCGCCTACACTTTTCTTGTCAGATATTGAACAGGTTTGGAGAAAGCTTCAAGATGCTGGAAATGAGATTGTTTCTATTACCAAGACCCTCTCTGATATGTCAAGAGCTTCCTACTGTGAGAAGTTCTATAACCGGGATTCCGACTCTCGCATGAAACCAGAGCAGACAGAAGAATGTGCTACGGGGAAAATTTGCACTTGCAGGCATTGTGGAAAGAAAGTAGATGGGATGGATTGTTTGGTTTGTGATTCATGTGAGGAGATGTACCACATGCCCTGTATTGAGCCTGCTGTGAAAGAAATACCCCACAAAAGCTGGTTCTGTGCCAATTGTTCCGGTAAGGGAATTGAATCTCAACATGAGAACTGTGTGGTGTGTGAAAGGTTAAATGTCTCAAAGACCCTGAACAACATTGCCGGTGAGGAAACACTGACTGAGTTGGAAGAGAATTCAAATTGTCCTATTGTTGATGACGGAATTCAAGTGTCTATAGGTGGGACAAACTCACCGAACTGCAAAATTTGTGGAGAAGAGGTGGATGGTGAAAAAGTAAAAATATGTGGTCACCCTTTTTGTCCCAGTAAATACTACCATGTAAGATGTTTGTCAAGTAAGCTGATGAATTTGTATGCTCAATGTTGGTACTGCCCTTCTTGTTTATGCCAAGTTTGCCTCACTGATCAAGATGATGATAAGATTGTCCTCTGTGATAGCTGTGATCATGCATACCACATCTATTGCTTGAAACCTCCGCGAAATTCTGTTCCAGAAGGGAAATGGTTCTGCACAAAATGTGATGCAGGGATCGAAGCAATACGGCGGGCAAAAAAGGCATGTGAGAGTAAAAAGTGGAGAACTGATGCTAATGTTTCAAAGCCAAATGATGAGAATGATAAGAAATGGAACAATAAACGAGGACGAGATTCAGACAAAGCTGAAGGAATGGACATGCTTTTAACTGCAGCCAATACTCTGAATTTTGAAGAGAACTTAACTGCAACCCAGATTGAGTCCCAAACAACATGA 2160 0.4102 MDTEGGTSDADNLGHADQDRCLEMGSVNNGVAIEDGNEVQCFKYGAVNSRVAIEDGNGIQCLKNETVNNGVVIADGNKVRWLKNETLNNGMVIADVVEGQVVRCLKNKIVNNGVAITDGNCAVEGKEVGCSKNETINNGVVIADGNGVSKGKEVRCLKNRTVSNGVEIANGKGVAEGDSSGVKYLLTYKRRKHVKSSSESKIQEGNKGCAQAASHLSDQGVKKPCAMGNTSKDYSHGHWGNVLLNHLHHSLGGSNGSIEGCIRESLMDYPKFCYAPRVTETFKIDKDDQECSSQSEQLSHRSHNETNGHDIMHSGCSSESDACGGTERCHRVLCNILTSEKFSSLCKVLLENFQGIKPQRIFDFSVINTRMKEQAYEHAPTLFLSDIEQVWRKLQDAGNEIVSITKTLSDMSRASYCEKFYNRDSDSRMKPEQTEECATGKICTCRHCGKKVDGMDCLVCDSCEEMYHMPCIEPAVKEIPHKSWFCANCSGKGIESQHENCVVCERLNVSKTLNNIAGEETLTELEENSNCPIVDDGIQVSIGGTNSPNCKICGEEVDGEKVKICGHPFCPSKYYHVRCLSSKLMNLYAQCWYCPSCLCQVCLTDQDDDKIVLCDSCDHAYHIYCLKPPRNSVPEGKWFCTKCDAGIEAIRRAKKACESKKWRTDANVSKPNDENDKKWNNKRGRDSDKAEGMDMLLTAANTLNFEENLTATQIESQTT 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0501 719 ProSiteProfiles Zinc finger PHD-type profile. 596 646 IPR019787 -
Lal22g0501 719 PANTHER HISTONE ACETYLTRANSFERASE 243 707 - -
Lal22g0501 719 MobiDBLite consensus disorder prediction 666 691 - -
Lal22g0501 719 SUPERFAMILY FYVE/PHD zinc finger 439 491 IPR011011 -
Lal22g0501 719 SUPERFAMILY FYVE/PHD zinc finger 598 650 IPR011011 -
Lal22g0501 719 SMART PHD_3 444 490 IPR001965 -
Lal22g0501 719 SMART PHD_3 549 598 IPR001965 -
Lal22g0501 719 SMART PHD_3 599 644 IPR001965 -
Lal22g0501 719 Pfam PHD-finger 445 490 IPR019787 -
Lal22g0501 719 Pfam PHD-finger 599 644 IPR019787 -
Lal22g0501 719 ProSiteProfiles Zinc finger RING-type profile. 599 644 IPR001841 -
Lal22g0501 719 PANTHER D4, ISOFORM A 243 707 - -
Lal22g0501 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 645 IPR013083 -
Lal22g0501 719 Gene3D - 336 491 - -
Lal22g0501 719 ProSiteProfiles Zinc finger PHD-type profile. 442 492 IPR019787 -
Lal22g0501 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 492 598 IPR013083 -
Lal22g0501 719 SUPERFAMILY FYVE/PHD zinc finger 544 598 IPR011011 -
Lal22g0501 719 ProSiteProfiles Zinc finger RING-type profile. 550 597 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0501 Lal-Chr22 3322704 3329842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0501 598 661 C2H2 Transcription Factor Family AT3G01460 48.438 4.98e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal22g0501 PHD 6.6e-13 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0501 22 3322704 3329842 Lal22g0501 22 3322704 3329842 ECH