Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0461 ATGTTTATGGAACGTGATTTTGGTACGCAGGGAATGCCACTTCCGACTGAATTTTCGGTTCCGGTGACGACCAGACCTGAGATTTCTGAACATTCCGGTCTTGTTCTTGAAATTGACTGCTTTGCGCAAGCAAGAAAAGCACTTAGCTTGCGCTGTCCTTTTGACGATAAAGATGAGAATTGGAGTCCCACAAAAGCTACTCTTCCTAGTGGGCTAGCTGCTTTCTTGAACCAAGGCTCCGATAATCGTAAGAAGCGCAGAAGGAAGTCTCATTCTAATGCCAATGCAGATAAGAAAAATATATCCAAGACTCGCGGTCCAAACATTTGGACTGAAACTGAGGAGTACTTCAGGGATTTGGCGTTGCCTGATATTGACACCTTGTTTGATGCATCATCTTTGCCTTCTAGTTTAGTTGCTCGTGAGTGTTTTTCCATTCCGGTTGTTAAGGAACCTGGACCAAGGGACAATGTAGTTGTTAGTAGTGAGAATGAAAATGGGAATAATGAAAATGCAGACATTGTGGCTGTGAAAAATGAGGATGGTTTTGTAGGAATTGACAGTGTTAATGACAAAGTTGATAGTGTTAATGGCAAGGATCAAGCTACTTATGATACTTCTGATTGTGCTGTTAGTTTAGAGTGGGTTTTGGGTTGTAGGAATAAGGTTTCTTTAACTTCCGAGCGCCCTTCAAAGAAAAGGAAGGTTTTGGGTGATGATGCCGGGTTGGAAAAAGTTTTAATTACTACCCCTCATGATGGGAACTTGTCTTATTGTCATTATTGTGGCAGGGGAGATTCGGGTTTAGAATCTAATCGGCTAGTTGTCTGTGGTTCTTGTAAAGTTGCGGTTCATAGGAAGTGCTATGGTGTGCAGGGTGATGTGGATGATGGGTCTTGGTTGTGCTCCTGGTGTGAGCGAATGGATGATATCAGTGAAACAGTGAATCCTTGTGTGCTTTGTCCGAACAAGGGTGGTGCTTTGAAACCTATTAATATAAGTGGGGAAGGTGCTCAGTCTTTACAGTTCGCTCACTTGTTTTGTTGCCTTTGGACACCTGAAATTTATGTGGATGATCTGAAGAAGATGGACCCTGTTATGGATATGGGTGGAATTGAGGAATGCCGGAGGAAACTAGTGTGTAATATATGCAAGGTGAAGTCTGGTGCATGTGTTCGGTGTAGCCATGGACCCTGCCGGCTTTCTTTCCATCCTTTATGTGCAAGGGAAGCTAGACAAAGGATGGAGGTTTGGGCGAAAGATTGTTCTGATAATGTTGAGTTGCGTGCTTTTTGCTTTAAGCACTCAGATTTTCAAGAGAAGAGCAGCATCTTGCAATCAGGAGATTCTGTTGCTATTGGCAGTGAATTCTCAGATGCTAGTGTCCTTCAAGTGAGTTTTCCTGTGAACAGTGAAAACAATTTAAAACGTGGCTGCAGAAACAGAGATAATGTTGGGACCATTTCCGATGGTAGTCCTGACAACTTGAGCCATAATGAACCAGAAGATGGAAGATTGTCTATTAGTCGGTTAAATGCTCACAACATGTTGGAATGTGATGCTGAGCAGCAACTGTATAATATTGGGACGGTGGGGAGGAGCAATGAGAATGCTAATGCATCTGATACCCTCAAATATGCACTTGTTTGGAAGAAGTTGATAGAGAGAGGGAAAATTGATGTGAAAGATGTAGCTCTGAAGATTGGCATTGCTCCTGAAGAACTAACTCCAAATATTTATGAGGCTTGCATGGCCCCTGATGTGCGACTCAAAATAGTCAATTGGCTAAAAGATCATGTATATACTAATGCATGTCATAAAGGTTCGAAAGTCAAATTCAAACCTGCCAGTTCATCCAAGGATGAAGATGGAGCCACTGATGGTTCTGATACTTCACTGATATCAGATCCTGGTTTGCTTGATCCTGTTGCTGTCATGTCAGTAGGACCACCAAGGAAAAGAGCTGCCAGCAACATTAGGATTTTGAAGGATAATGTAGTGACATGCTCATCTGAGGCGGTTTCTAGTGAGAATGGGATGCCAATGGACAAGTGCAGTGTAGGTGAACCTGACTGTGGAAATACAGGAACCTCCAATGAAGTATCCATTCCTGAAGTATCTGAAAAGAATTTAACCACGTCTGAGGATACTTTACCTGAAGTTCAAGGCTGTGCTGATAAAGTTGACCATAGCAGCTTAGCAGGATGCATTTCAGATGAAACGTTGCCTACATGTTTGTCGAAACCTTCTACGCCTTCTGAGCATTACCTTCCAGTCTGTTCTAATTCAGAAGTACCCGATTCTGGTTCCAAAAGTATAGAAGCAACCTCTTGTTACGTTCACCCGTACATCAGCAAGGAATTGCTTCAGCTTCATAATAGCGTGCTCTCAGAGGATATTATATGTGAGTTAAATTTGAATATCTTTTCTTCAAGTCCAAGGAGGGATGGAAATTCTTCTTTGGTTGAATCCTTGAGGGCCAGTGGCCATTCAGGTAACCAGCATCAGCAATTAACAGGTAACGAGCATTTAAGTTGCCTTGATGATTGCAAGTCTGATCAAATGAATATGGAGCAGTTGGTTAGGGCCAGAGAAATGGGCGTTTTCGAATATTCTCCAGAAGATGAAGTGGAGGGGGAACTTATATATTTTCAGCATAGGTTATTGCAGAATGCAGTGAGAAGAAGGCAGATTGCGGATAACTTAGTCTTCAGTGTTGCCAAGAGTTTGCCAAAGGAGATTGATACAGCACATCAGCAAATGTGGGATGCTGTGCTTGTTAATCAATACATGTATGATCTTAGGGAAACAAAGAAGAGGGGCAGAAAAGAGAGAAAACACAAGGAAGCACAAGCAGTTCTAGCTGCTGCAACTGCTGCCGCCGCTGCTCCTAGGGTTTCTTCTTTTCGGAAAGACTCTTTAGCTGAATCCATGCAACAGGAGAATTTGATAAAGTTGGATACTTTAAGTGGGAGGGCTGGTGTTTGTTCTCAGACAATGCCACGAGCCAAAGAGACACTTTCAAGACTAGCTGTGATTAGGACTTCATCAGAGAAACATTCAGATTTTAGCTTGTCGTCTTCAAATCTTTCTAAGGAGCATCCTGGATTGTGTGATGTATGCAGACAACCAGAGACATTGTCAAACACTATCCTAGTTTGCTCTAGTTGCAAGGTTGCAGTTCACTTGGATTGCTATGGTAGTGTGAAAGAAACAACAGGTCCCTGGTACTGTGATTTATGTGGAGATTTATCATCTAGAAACTCTGGGGCATCTGCTATAAATTCCGTGGAGAAGCCTTATCTTATTGCAGAGTGCGCTCTCTGTTGTGGTTCTTATGGTGCATTTAAGAAGTCTTCTGATGGCCAATGGATTCATGCCTTTTGTGCTGAGTGGATTTTTGAGTCGACGTTCAGAAGAGGACAAGTAAATGCTGTTGAAGGGGTGGAGACTGTGTTGAAGGAAGTTGATATTTGTTGCATCTGCTGCCACAAACGTGGTGTATGCATCAAGTGTAGCTTTGGCAATTGTCAAACCAAGTTCCATCCATCCTGTGCTAGAAATGCTGGTTTTTACATGAATATGAGCACTGCAGCTGGCAAGCCACATAAAAAGCCGCATCACAAGGCTTACTGTGAAAAACATGGTTCGGAGCAGAGAGCAAAGGTTGCCGCAGAAGCTCAAAAACATGGAATGGAAGAGTTAAAAAGCTTCAGGCAAATTAGGGTTGAGCTAGAGAGATTACGTCTCCTTTGCGAAAGAGTTATCAGGCGTGAAAAAATAAAGCGGGAATTGGTTCTATGCTCACAAGACATGCTTGCCTTTAAAAGAGATCATGTCGCTAGGTCTGTGCTAGCTCAGAGATCTTTCATCCTTCCTGGTGGGAGTTCAGAATCAGCTACAACATCCCTTAAAGTGAACACAGAGGGCAACAGATCATGCAGTGAAGTAGTTCAAAGATCGGATGATGTAACAGTGGACAGCTCAGTTCCTGACAAACACCATGTCGGAATTGCTGTATCCATGGACACTGACCCAAAATTAGATGATGACTGCTCAACCTCACCTAGCAATTATAACCACAAGATTCCAGAGAGGTTGCAATATTTTGGCAAGAAGATTCCTCAAAGAGCTTCTGCCATATCACATAAGTTGGATGATGGTGGATGGAGATCAAAATCAAGAAAGTCACAGCATGCAGATACATTTGGAAAAGAGCTTGTTATGACATCAGACGAAGCATCTATGAAGAACTCGATGTTACCTAAAGGGTATGCTTATGTTCCTGCTGATTGCTTGTCGAATGATGACATACAGCCTAACCAGGATGTAGATGCTAATGGATCAGTCGAGCACGATAGGTAG 4365 0.4268 MFMERDFGTQGMPLPTEFSVPVTTRPEISEHSGLVLEIDCFAQARKALSLRCPFDDKDENWSPTKATLPSGLAAFLNQGSDNRKKRRRKSHSNANADKKNISKTRGPNIWTETEEYFRDLALPDIDTLFDASSLPSSLVARECFSIPVVKEPGPRDNVVVSSENENGNNENADIVAVKNEDGFVGIDSVNDKVDSVNGKDQATYDTSDCAVSLEWVLGCRNKVSLTSERPSKKRKVLGDDAGLEKVLITTPHDGNLSYCHYCGRGDSGLESNRLVVCGSCKVAVHRKCYGVQGDVDDGSWLCSWCERMDDISETVNPCVLCPNKGGALKPINISGEGAQSLQFAHLFCCLWTPEIYVDDLKKMDPVMDMGGIEECRRKLVCNICKVKSGACVRCSHGPCRLSFHPLCAREARQRMEVWAKDCSDNVELRAFCFKHSDFQEKSSILQSGDSVAIGSEFSDASVLQVSFPVNSENNLKRGCRNRDNVGTISDGSPDNLSHNEPEDGRLSISRLNAHNMLECDAEQQLYNIGTVGRSNENANASDTLKYALVWKKLIERGKIDVKDVALKIGIAPEELTPNIYEACMAPDVRLKIVNWLKDHVYTNACHKGSKVKFKPASSSKDEDGATDGSDTSLISDPGLLDPVAVMSVGPPRKRAASNIRILKDNVVTCSSEAVSSENGMPMDKCSVGEPDCGNTGTSNEVSIPEVSEKNLTTSEDTLPEVQGCADKVDHSSLAGCISDETLPTCLSKPSTPSEHYLPVCSNSEVPDSGSKSIEATSCYVHPYISKELLQLHNSVLSEDIICELNLNIFSSSPRRDGNSSLVESLRASGHSGNQHQQLTGNEHLSCLDDCKSDQMNMEQLVRAREMGVFEYSPEDEVEGELIYFQHRLLQNAVRRRQIADNLVFSVAKSLPKEIDTAHQQMWDAVLVNQYMYDLRETKKRGRKERKHKEAQAVLAAATAAAAAPRVSSFRKDSLAESMQQENLIKLDTLSGRAGVCSQTMPRAKETLSRLAVIRTSSEKHSDFSLSSSNLSKEHPGLCDVCRQPETLSNTILVCSSCKVAVHLDCYGSVKETTGPWYCDLCGDLSSRNSGASAINSVEKPYLIAECALCCGSYGAFKKSSDGQWIHAFCAEWIFESTFRRGQVNAVEGVETVLKEVDICCICCHKRGVCIKCSFGNCQTKFHPSCARNAGFYMNMSTAAGKPHKKPHHKAYCEKHGSEQRAKVAAEAQKHGMEELKSFRQIRVELERLRLLCERVIRREKIKRELVLCSQDMLAFKRDHVARSVLAQRSFILPGGSSESATTSLKVNTEGNRSCSEVVQRSDDVTVDSSVPDKHHVGIAVSMDTDPKLDDDCSTSPSNYNHKIPERLQYFGKKIPQRASAISHKLDDGGWRSKSRKSQHADTFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDDIQPNQDVDANGSVEHDR 1454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0461 1454 Pfam PHD-finger 1049 1081 - -
Lal22g0461 1454 Pfam PHD-finger 272 306 - -
Lal22g0461 1454 ProSitePatterns Zinc finger PHD-type signature. 1038 1081 IPR019786 -
Lal22g0461 1454 ProSitePatterns Zinc finger PHD-type signature. 259 305 IPR019786 -
Lal22g0461 1454 MobiDBLite consensus disorder prediction 76 105 - -
Lal22g0461 1454 ProSiteProfiles Extended PHD (ePHD) domain profile. 1103 1216 IPR034732 -
Lal22g0461 1454 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 821 1430 - -
Lal22g0461 1454 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 207 446 - -
Lal22g0461 1454 SUPERFAMILY FYVE/PHD zinc finger 249 306 IPR011011 -
Lal22g0461 1454 MobiDBLite consensus disorder prediction 1431 1454 - -
Lal22g0461 1454 ProSiteProfiles Extended PHD (ePHD) domain profile. 315 436 IPR034732 -
Lal22g0461 1454 MobiDBLite consensus disorder prediction 481 502 - -
Lal22g0461 1454 PANTHER PHD FINGER PROTEINS 821 1430 - -
Lal22g0461 1454 PANTHER PHD FINGER PROTEINS 207 446 - -
Lal22g0461 1454 CDD ePHD 1106 1215 - -
Lal22g0461 1454 ProSiteProfiles Zinc finger PHD-type profile. 256 308 IPR019787 -
Lal22g0461 1454 ProSiteProfiles Zinc finger PHD-type profile. 1035 1084 IPR019787 -
Lal22g0461 1454 Pfam PHD-zinc-finger like domain 317 435 - -
Lal22g0461 1454 Pfam PHD-zinc-finger like domain 1105 1215 - -
Lal22g0461 1454 MobiDBLite consensus disorder prediction 1384 1402 - -
Lal22g0461 1454 MobiDBLite consensus disorder prediction 813 838 - -
Lal22g0461 1454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1013 1091 IPR013083 -
Lal22g0461 1454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 313 IPR013083 -
Lal22g0461 1454 MobiDBLite consensus disorder prediction 611 635 - -
Lal22g0461 1454 SUPERFAMILY FYVE/PHD zinc finger 1025 1081 IPR011011 -
Lal22g0461 1454 MobiDBLite consensus disorder prediction 1382 1403 - -
Lal22g0461 1454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 438 IPR013083 -
Lal22g0461 1454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1103 1218 IPR013083 -
Lal22g0461 1454 SMART PHD_3 1037 1082 IPR001965 -
Lal22g0461 1454 SMART PHD_3 258 306 IPR001965 -
Lal22g0461 1454 SMART PHD_3 1159 1216 IPR001965 -
Lal22g0461 1454 SMART PHD_3 380 436 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0461 Lal-Chr22 3028309 3038189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0461 272 456 C2H2 Transcription Factor Family AT3G14740 29.412 6.80e-17 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal22g0461 zf-HC5HC2H_2 1.6e-21 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0461 - - gmx:100775631 1664.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0461 22 3028309 3038189 Lal22g0461 22 3028309 3038189 ECH