Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0451 ATGGCAGCTAAAATGAATTTCTTCAACAACAGCACACAACTTGAATCAGATCCTTTCAGAGTTGAGTTAATGGAAGTTCTTGCACCTTTTGTGAAAAGTCCTTCCACAACAACAACTCCTTCAATTTCATACCTACCTTCTCCCTCTACCCTTTCCCCTACCCAGCCCAATTTCTACATAGAACATTGTCCTACAATGATGGCCCATTTATTTGACACTGGGTTATCATACACCCAAAACTTCACAGGCTTTGAGCAACCAAGTTCTGTTATTGGTCTAAACAACCTAACTCCATCTCAGGTTAACCAAATCCAACCCCAGATTCATCAGAACAACACCAATACAGTAAGGTTCCTGAGTCCCAAACCTGTCCCAATGAAGCAAGTGGGGTTGCCTACAAAGCTGTATAGAGGAGTAAGGCAAAGGCATTGGGGGAAATGGGTGGCTGAGATAAGATTCCCAAAGAACAGAACAAGGCTTTGGCTTGGTACTTTTGACACTGCTGAAGAAGCTGCTTTGGCTTATGACAAAGCAGCATACAAGCTCAGAGGTGACTTTGCAAGGCTCAACTTCCCAAACCTGAAGCACCAAGGTTCATGTGTTGGAGAGTATAAGCCTTTGCATTCTTCTGTTTATGCAAAGCTTGATGCTATTTGTGATGATTTGGAGAAACAAGGGAAGCCAGAGAAGAAGAAGCCTGCTAAGAGATCAAAAGTGAGTTCAAAGGAAGAGGTTCAGCCACAGTTGCAGTACAACAACAACAACAAATGCAAGGAGGAAACTTCATTGTCTCATGTTGTGACAGATTGTGAAGGGTCTTCTCCTTTGTCTGATCTTACTTTTGATGATTTCACTGAGCCACAGTGGGAAACTCATTCAGAACATTTTAATCTGATGAAGTTCCCTTCTTATGAGATAGACTGGGATTCACTACTGAACCCAATCTAA 948 0.4219 MAAKMNFFNNSTQLESDPFRVELMEVLAPFVKSPSTTTTPSISYLPSPSTLSPTQPNFYIEHCPTMMAHLFDTGLSYTQNFTGFEQPSSVIGLNNLTPSQVNQIQPQIHQNNTNTVRFLSPKPVPMKQVGLPTKLYRGVRQRHWGKWVAEIRFPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLKHQGSCVGEYKPLHSSVYAKLDAICDDLEKQGKPEKKKPAKRSKVSSKEEVQPQLQYNNNNKCKEETSLSHVVTDCEGSSPLSDLTFDDFTEPQWETHSEHFNLMKFPSYEIDWDSLLNPI 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0451 315 MobiDBLite consensus disorder prediction 224 242 - -
Lal22g0451 315 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 310 - -
Lal22g0451 315 Gene3D AP2/ERF domain 135 193 IPR036955 GO:0003700|GO:0006355
Lal22g0451 315 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 310 - -
Lal22g0451 315 ProSiteProfiles AP2/ERF domain profile. 135 192 IPR001471 GO:0003700|GO:0006355
Lal22g0451 315 MobiDBLite consensus disorder prediction 224 250 - -
Lal22g0451 315 SUPERFAMILY DNA-binding domain 135 193 IPR016177 GO:0003677
Lal22g0451 315 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Lal22g0451 315 PRINTS Ethylene responsive element binding protein signature 158 174 IPR001471 GO:0003700|GO:0006355
Lal22g0451 315 SMART rav1_2 135 198 IPR001471 GO:0003700|GO:0006355
Lal22g0451 315 CDD AP2 134 194 IPR001471 GO:0003700|GO:0006355
Lal22g0451 315 Pfam AP2 domain 136 184 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0451 Lal-Chr22 2950290 2952599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0451 1 312 AP2-EREBP Transcription Factor Family AT1G78080 49.280 9.83e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal22g0451 AP2 9.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0451 K09286 - gmx:732559 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0451 22 2950290 2952599 Lal22g0451 22 2950290 2952599 ECH
Lal22g0451 22 2950290 2952599 Lal6g0485 6 3102309 3104129 LSH
Lal22g0451 22 2950290 2952599 Lal17g0423 17 2851831 2853454 PCT
Lal22g0451 22 2950290 2952599 Lal21g0491 21 3493589 3494635 PCT
Lal22g0451 22 2950290 2952599 Lal4g0376 4 2565598 2566632 PCT
Lal17g0423 17 2851831 2853454 Lal22g0451 22 2950290 2952599 PCT
Lal21g0491 21 3493589 3494635 Lal22g0451 22 2950290 2952599 PCT
Lal4g0376 4 2565598 2566632 Lal22g0451 22 2950290 2952599 PCT