Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0442 ATGGCTTACCCACATTATCGATCACAGTTTGGAGACACAACGTTCACCAAAGTCTTTGTTGGAGGACTAGCTTGGGAGACTCCAACCGAAGAACTTCGCAAATATTTTGAGCAGTTTGGAGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCTAGAAGGGCTTGTACTGATCCAAACCCAGTAATAGATGGAAGAAGAGCGAATTGTAACATTGCTTCTCTAGGAAGGCCTAGACCATCACCACCAAGAGGAAGAGGGACATTTCAAGGTGCAGCATCGTATAGTGGTGTTCCGGCAGCAGGACCACCGCCACTGGCACCAGCACCACCACTAATGTACCCACAACCATATGGCTACCCTACCTACACTCCTGATTATGGGTACCACCAAGCCACCATGTACAACCCACAGATTCAGCAAGCACAATACTATCAAAACCTGTATGGGCCATCATCTTCAACCATGGCTTCTCCATATTACTATGGTTATTCTATGCAAGCACCTAGGGCTACATTTTCTACACCCCAAGCAAATCGTTTACCAGCTGGGCTATCCTATGTATACTACCCTACTTCACCAATTGAAGGCTCTTCAGCATTTCGTCCACCTTATCAACCAGCAACAAGGCAAATCCACCCTTCAACTAGTGATTCACAGACTCAGCAGCGTACCTCTTCTGAGACAGCATCTGGAGTAGTTATAACTTCAGAAAGTTCAAATACCCAAGGGAAGAGCTAA 795 0.4541 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEELRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACTDPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGAASYSGVPAAGPPPLAPAPPLMYPQPYGYPTYTPDYGYHQATMYNPQIQQAQYYQNLYGPSSSTMASPYYYGYSMQAPRATFSTPQANRLPAGLSYVYYPTSPIEGSSAFRPPYQPATRQIHPSTSDSQTQQRTSSETASGVVITSESSNTQGKS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0442 264 MobiDBLite consensus disorder prediction 227 264 - -
Lal22g0442 264 PANTHER GEO13361P1-RELATED 1 255 - -
Lal22g0442 264 PANTHER - 1 255 - -
Lal22g0442 264 MobiDBLite consensus disorder prediction 217 264 - -
Lal22g0442 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 74 IPR000504 GO:0003723
Lal22g0442 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Lal22g0442 264 Gene3D - 3 111 IPR012677 -
Lal22g0442 264 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lal22g0442 264 SUPERFAMILY RNA-binding domain, RBD 9 115 IPR035979 GO:0003676
Lal22g0442 264 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0442 Lal-Chr22 2867991 2874324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0442 12 92 C2H2 Transcription Factor Family AT2G19380 40.741 1.77e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0442 K25006 - gmx:100787086 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0442 22 2867991 2874324 Lal22g0442 22 2867991 2874324 ECH
Lal18g1153 18 14432501 14437541 Lal22g0442 22 2867991 2874324 LSH
Lal22g0442 22 2867991 2874324 Lal6g0469 6 2981369 2985982 LSH