Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0441 TATATTGGATGGAGAACAATAATAGGAACATATAATGCAGCATCAGATATATATATATATAATGTAGCTACTATTACAATAATTTCATTTTTGTACATTGAAATGAATCATAATCAGCTTCAGCCTCTACCTCTGCTAAGCAGCTTCCTTGGTAGTTCATCTCCACAAGATGAAGTTTTACTACAAAACCAAAAACCTAGACCATGCTATAGTGAAGCTCATGAGGATGTCACAGTGTCCTTACACATAGGGCTGCCTTACAATTCCAGTAGTGTTTCCAACACCAATAACAATGGAGTTGTGAATTTATCTGGTCAAGTCCCTAACAATTACTGGATACCAACTCAAGAGCAGATCCTCATTGGGTTCAGCCATTTCTCTTGTCCTATCTGCATCAAAACCTTCAATCGCTACAACAACCTTCAGATGCACATGTGGGGACATGGGTCACAGTATCGAAGAGGACCAGACTCACTGAAAAGAACTCATCCACGACCTTTATTAGACATTCCATGCTATTGTTGCTCAATGGGATGCAAGAACAACATAGAGCACCCAAAGGCCAAGCCTCTGAAGGATTTTCGAACATTACAAACACACTACAAGAGAAAGCATGGGACAAAGCCCTTCACGTGTCGCAAGTGTGGGAAATCTTTGGCTGTAAAAGGTGACTGGAGAACCCATGAAAAAAACTGTGGCAAACGCTGGCTTTGTATTTGTGGTTCTGATTTCAAACATAAGAGGTCGCTTAAGGATCATATCAAAGCTTTTGGCTTTGGTCATAGCCCTTTTTCTTCTTCTGATGCCATATGGAGGATGCAACAACGTTTGCGGCGGCACAAAGCAATGTTCTGGACCTATGAAAGACATTTGGGTAGATATTATTTGTTTCCCCGTTAA 900 0.4056 YIGWRTIIGTYNAASDIYIYNVATITIISFLYIEMNHNQLQPLPLLSSFLGSSSPQDEVLLQNQKPRPCYSEAHEDVTVSLHIGLPYNSSSVSNTNNNGVVNLSGQVPNNYWIPTQEQILIGFSHFSCPICIKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSMGCKNNIEHPKAKPLKDFRTLQTHYKRKHGTKPFTCRKCGKSLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHSPFSSSDAIWRMQQRLRRHKAMFWTYERHLGRYYLFPR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0441 299 Gene3D Classic Zinc Finger 125 148 - -
Lal22g0441 299 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 30 265 - -
Lal22g0441 299 SMART c2h2final6 173 205 IPR013087 -
Lal22g0441 299 SMART c2h2final6 126 148 IPR013087 -
Lal22g0441 299 SMART c2h2final6 210 230 IPR013087 -
Lal22g0441 299 PANTHER ZINC FINGER PROTEIN WIP2 30 265 IPR043584 GO:0003700|GO:0010468
Lal22g0441 299 SUPERFAMILY beta-beta-alpha zinc fingers 195 230 IPR036236 -
Lal22g0441 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 126 153 IPR013087 -
Lal22g0441 299 ProSitePatterns Zinc finger C2H2 type domain signature. 128 148 IPR013087 -
Lal22g0441 299 Gene3D Classic Zinc Finger 188 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0441 Lal-Chr22 2865008 2867107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0441 35 267 C2H2 Transcription Factor Family AT1G34790 57.308 3.49e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal22g0441 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0441 - - gmx:547675 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0441 22 2865008 2867107 Lal22g0441 22 2865008 2867107 ECH