Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0430 ATGCTGAGGAATCATAGAAAGCTCTTTCCTTCAGGAACTAGTACAAACCAAACACAAGATTGTTATGGTTTTTGTGACCCAAAATGCCCTTACAATTGTTACACTTACCCAAACTACTCCTTCCCTCCACCACCACCACCACTATTTATTGATCATTCAGACCAAGCTAACCATATACCCTCTTACTTGATCAGCCTTGTTTCTTTAATCACAGTCATTTTTGTTGTTGCTGTTTTCTATGTGATCAAATTAAAATGTTACAATGACTTGTGTGGCTGGAGAAGCAATAGATCACTTCCCTCTCAATCAAACAACAATGGAGAGTATCTAAATGAGAACCAAGTTGATCATCCTGTGTGGCTCATTACCACAGTTGGTTTACAACAGTCAATCATAAATTCCATTACAGTTTGTAAGTACAAAAAGGATGAAGGGTTGATCGAAGGAACCGAGTGTTCGGTGTGCTTGAATGAGTTCAGGGAAGGTGAAACCTTAAGACTATTGCCAAAGTGCAATCATGCTTTTCATATTCCTTGTATTGATACTTGGTTAAGGTCTCATACCAATTGTCCTCTTTGTCGAGCCGGTATCGTCTCTAATAACAATGCCAGTGTCATTCCTGAAGTAGCAGTGTCAAATTTGGCACCAATAGATCAAGAAAATACCAACTTGGGAATAAATCAAGCGACCCAGATGGAGAATTCACAGAATGAAGGTGTTGGTGGGGTAAACAACAATGTTGTTAATATCAATAACAACGAGGCCTTGGAAAACAGGTCTGGAACAGAAGAAGCAAGTGAAACACTGCAGTTTAATGATGAATCTAATTCCAAGGAACATGTTTCTCAGGTATTCAATGATGCAAATGAGAATCATCATAAGGTTCTAAATGATGAGATACAAGCAGATTCTTATTCAACAGATCCTGAAAGCCACACACTTGATAATATACAAAATGAGACAGAGTTATTGCAAATGGTTAATGTTTTGAAGCAAGAAAGTGAGAACTCAAAAACATGCAAGATAATGCGTCGTTCCTCAATTGAAGAGTGTCTGCATATAAGCCCAGTTTCTATGAAAAGGTCATTCTCCTGCAGTGGAAGGAATCCATCTACAAGAGGTTACATGAGTCTAAACAAAACTCTTCCCTAA 1152 0.3819 MLRNHRKLFPSGTSTNQTQDCYGFCDPKCPYNCYTYPNYSFPPPPPPLFIDHSDQANHIPSYLISLVSLITVIFVVAVFYVIKLKCYNDLCGWRSNRSLPSQSNNNGEYLNENQVDHPVWLITTVGLQQSIINSITVCKYKKDEGLIEGTECSVCLNEFREGETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVSNNNASVIPEVAVSNLAPIDQENTNLGINQATQMENSQNEGVGGVNNNVVNINNNEALENRSGTEEASETLQFNDESNSKEHVSQVFNDANENHHKVLNDEIQADSYSTDPESHTLDNIQNETELLQMVNVLKQESENSKTCKIMRRSSIEECLHISPVSMKRSFSCSGRNPSTRGYMSLNKTLP 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0430 383 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Lal22g0430 383 Pfam Ring finger domain 151 194 IPR001841 -
Lal22g0430 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 204 IPR013083 -
Lal22g0430 383 MobiDBLite consensus disorder prediction 364 383 - -
Lal22g0430 383 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 373 - -
Lal22g0430 383 SMART ring_2 152 193 IPR001841 -
Lal22g0430 383 SUPERFAMILY RING/U-box 142 199 - -
Lal22g0430 383 CDD RING-H2_PA-TM-RING 151 194 - -
Lal22g0430 383 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 373 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0430 Lal-Chr22 2791802 2792953 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0430 3 198 C3H Transcription Factor Family AT1G72220 45.946 1.74e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0430 - - aprc:113847030 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0430 22 2791802 2792953 Lal22g0430 22 2791802 2792953 ECH
Lal22g0430 22 2791802 2792953 Lal6g0459 6 2911917 2912621 LSH