Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0429 ATGATGCGCTATCCTGCACCTTCTCATATCACTTTTCTCACATTCACATCACTTCTTCGATATGCCCATACCTTCCTCTCTCTACTTCTTCTTCATTTCCTTCTCATCATATCTCCGGCAACCGCACAGAACCAAGATGCTATGTCTCCACCACAAGACCCGTTCGCCAAGCTCCAGTTCGACAAAACCATGACCGTCTTAATCGTCATCATCATCATCTTGTTATTCATCTTAGCCTTTGTTTCCATCTACACTCGCCAATGCACAGAGCAAAGAGTCATGGCGAGGTTCAATTTCTCCATCCCCGTCATCGGCGTCAGCGACAGTACTAACCGACCACCGTGCGGCCTTGACCAAGAGATCATCGACACATTCCCAACCTTCGTATACTCCACCGTGAAAAGCCTTAAAATCGGAATTGCAACGCTAGAATGCGCTGTGTGCCTCAACGAGTTCCTTGACGATGAAACGCTGCGTTTAATCCCCAAATGCAGCCACGTGTTCCACCCTGATTGCATTGATGCATGGCTTAGAACTCATTCCACATGTCCTGTTTGCCGCGCAAATTTAGTTCAAAAACCTGGAGACATTCCTTCCCTCGCAATTCAGATTCCGGAACCTCGCAATTCTGAATCAGAGGATCCGAATGATATTAACGATGGTGTTATGAATTCAATAGAAGAATCTGATTTAGATAAGCAGAACTTGTTCCCGCGTTCTCATTCAACGGGTCCTTGGCATCGAGATAGGTACACGCTGAGGTTGCCGGAGGAGGTGTTGAACCGGTTGGTGAATTCGGGAAGGAGGCTGAACCGGACGAAGAGTTGCGGGGTGATGTGGCAAAGAGAGATCAGTGGGAGGAGGAGTTATCGGAACCAAGAGCGGTTTGGAGGGGAAAACCGGTTAGACCGGTGGGGGTTCACATGGACCCCATCGTTCATGAGTAGGGATTGGTCAAAGAAGGAGAATGTGAAAGTGGAAGTGGACGTTGAAGGACATTCTTATGATCGTTTATTTTCTTCCAAGGAGTGA 1032 0.4777 MMRYPAPSHITFLTFTSLLRYAHTFLSLLLLHFLLIISPATAQNQDAMSPPQDPFAKLQFDKTMTVLIVIIIILLFILAFVSIYTRQCTEQRVMARFNFSIPVIGVSDSTNRPPCGLDQEIIDTFPTFVYSTVKSLKIGIATLECAVCLNEFLDDETLRLIPKCSHVFHPDCIDAWLRTHSTCPVCRANLVQKPGDIPSLAIQIPEPRNSESEDPNDINDGVMNSIEESDLDKQNLFPRSHSTGPWHRDRYTLRLPEEVLNRLVNSGRRLNRTKSCGVMWQREISGRRSYRNQERFGGENRLDRWGFTWTPSFMSRDWSKKENVKVEVDVEGHSYDRLFSSKE 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0429 343 Pfam Ring finger domain 144 187 IPR001841 -
Lal22g0429 343 SMART ring_2 145 186 IPR001841 -
Lal22g0429 343 CDD RING-H2_PA-TM-RING 144 187 - -
Lal22g0429 343 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Lal22g0429 343 PANTHER RING-H2 FINGER PROTEIN ATL11 26 283 - -
Lal22g0429 343 SMART FANCL_C_2 141 194 - -
Lal22g0429 343 PANTHER RING FINGER DOMAIN-CONTAINING 26 283 - -
Lal22g0429 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 192 IPR013083 -
Lal22g0429 343 SUPERFAMILY RING/U-box 139 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0429 Lal-Chr22 2789242 2790273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0429 24 332 Rapid Response to Elicitors AT3G05200 37.931 6.73e-60 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0429 K10664 - gmx:100807828 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0429 22 2789242 2790273 Lal22g0429 22 2789242 2790273 ECH