Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0424 ATGGAATTTCAGGAGCAAGAAGAGCAAGAGGAGGAAATGGGAATTCCTGAGCCACCAAGTTATGACTCGTTCGGAAACATGTCCAAACTCGGCGGTGCTGTCGGAACTGAGGGAGCTGCAACCACCATAGGGCGCAAAAGTGGGACCATCAAATACAAAGAATGTCAAAAGAACCATGCTGTCAGTTTCGGCGGCCATGCCGTCGATGGCTGCTGTGAGTTCATCGCCGCCGGGGAAGAAGGCACGCTGGAGGCAGTTATCTGCGCTGCCTGTAACTGCCACCGGAATTTCCACCGCAAGGAGATTGACGGCGAATTTAGCCCCTATAACCGTCCTCAACCACCACCGCCTCCACCGCAGATGCATCACCACCACCAAATCTTACCATACTACCACCGCGGGCCAACGTACCCCTCCGCCTCCGGATACTTACACCATCATCTTGTCTCTCCGATGTCACAGCACCGTCCGTTGGCTCTTCCAGCGGCGGCAGCGGCGTCAGGAGGTGGAATGAGTAGGGAAGAGGAGGACATGTCAATTCCTAGCAGCAGCGGCGGCGGTGGAACGAGGAAGAGGTTTAGGACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGCGTTTGCGGAACAAGTTGGGTGGAGAATCCAGAAGGATGATGAAGCTGCGGTGGAGCAGTTCTGTGTTGAGAATTGTGTGAAGAGAAATGTTCTCAAAGTTTGGATGCATAATAACAAGAACAGTCTTGTTTACTTAACTAGTGTTATTTATTATGGGATTTTAGTGGGTGATGATTTCCCAGTTTCATGTGGGTGGCATTAG 822 0.5195 MEFQEQEEQEEEMGIPEPPSYDSFGNMSKLGGAVGTEGAATTIGRKSGTIKYKECQKNHAVSFGGHAVDGCCEFIAAGEEGTLEAVICAACNCHRNFHRKEIDGEFSPYNRPQPPPPPPQMHHHHQILPYYHRGPTYPSASGYLHHHLVSPMSQHRPLALPAAAAASGGGMSREEEDMSIPSSSGGGGTRKRFRTKFTQEQKEKMLAFAEQVGWRIQKDDEAAVEQFCVENCVKRNVLKVWMHNNKNSLVYLTSVIYYGILVGDDFPVSCGWH 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0424 273 MobiDBLite consensus disorder prediction 109 123 - -
Lal22g0424 273 Pfam ZF-HD protein dimerisation region 50 102 IPR006456 -
Lal22g0424 273 Gene3D - 175 250 - -
Lal22g0424 273 SUPERFAMILY Homeodomain-like 180 247 IPR009057 -
Lal22g0424 273 MobiDBLite consensus disorder prediction 1 15 - -
Lal22g0424 273 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 52 101 IPR006456 -
Lal22g0424 273 MobiDBLite consensus disorder prediction 166 191 - -
Lal22g0424 273 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 51 102 IPR006456 -
Lal22g0424 273 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 37 249 - -
Lal22g0424 273 MobiDBLite consensus disorder prediction 104 124 - -
Lal22g0424 273 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 249 - -
Lal22g0424 273 MobiDBLite consensus disorder prediction 1 29 - -
Lal22g0424 273 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 190 247 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0424 Lal-Chr22 2761734 2762828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0424 1 249 ZF-HD Transcription Factor Family AT4G24660 51.406 1.91e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal22g0424 ZF-HD_dimer 1.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0424 - - lang:109357419 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0424 22 2761734 2762828 Lal22g0424 22 2761734 2762828 ECH
Lal22g0424 22 2761734 2762828 Lal17g0387 17 2590011 2590766 PCT
Lal22g0424 22 2761734 2762828 Lal21g0462 21 3293813 3294559 PCT
Lal22g0424 22 2761734 2762828 Lal4g0342 4 2296222 2296977 PCT
Lal17g0387 17 2590011 2590766 Lal22g0424 22 2761734 2762828 PCT
Lal21g0462 21 3293813 3294559 Lal22g0424 22 2761734 2762828 PCT
Lal4g0342 4 2296222 2296977 Lal22g0424 22 2761734 2762828 PCT