Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0417 ATGGCAGAAAATTTTGAAATACCTGACATGTTCTCGAAGCTTCTTCATCATCAACAACAACAATATCATTCTCTATCTAACACTCACCCTTTCCAATTCTCCAATACCTCAGAAGATGATGATAGCCACAGCAGCGGTGGGCCCACACCATTTACCGCCCAAAAGCCCGTCTCAGATGGAGCTACTATTGAAGTCGCACGTAAGCCCAGAGGCCGTCCACCGGGCTCTAAAAACAAGCCCAAGTCGCCTATCGTATTAATTAAAGAGCCCGAGCCCGTCACGAGCCCATACATTTTAGAACTTCCAAATGGAAGCGACGTCGTTGAGTCCTTAAGGCTTTTCAGCATTAGAAACAACACGGGCTTATGTGTTCTAAAGTGTAACGGAACCGTTGTTAACGTCACTCTCCGTCAACCTTCTTCTGATGCTTCAGGAATCCCCGTTAACTTTGAAGGATGCTTTGAAATTATCTCATTATCCGCAATCATATTCCCTCATTCTTCGCCGGTGGTTCCTAATGCCTTTTCTATTACTCTCGCCGGACGTGACGGCCGGATTGCTGGAGGATTCGTCGTCGGACGGTTAATTGCCGCCGGGACGGTGTTCGTGGTTGCCGCTTCGTTTAACAATCGGTCTTATCACAGGCTTCCATTGGAAGAGGAAGTGAGACACGACAACTCGGTTTCTGGTGTCGTAGATATGCAGTCTCCGCCGGTGTATGACGGTGGCGAAAGCAGCCACGAGCAGCACATGTATAACTATCACTTGCCCTCTGAAATGAATTGGGCTCCAATGGCAAGAGCACCACTACCTCCACCACCTTTCTGA 828 0.4831 MAENFEIPDMFSKLLHHQQQQYHSLSNTHPFQFSNTSEDDDSHSSGGPTPFTAQKPVSDGATIEVARKPRGRPPGSKNKPKSPIVLIKEPEPVTSPYILELPNGSDVVESLRLFSIRNNTGLCVLKCNGTVVNVTLRQPSSDASGIPVNFEGCFEIISLSAIIFPHSSPVVPNAFSITLAGRDGRIAGGFVVGRLIAAGTVFVVAASFNNRSYHRLPLEEEVRHDNSVSGVVDMQSPPVYDGGESSHEQHMYNYHLPSEMNWAPMARAPLPPPPF 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0417 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 17 273 - -
Lal22g0417 275 PIRSF ESCAROLA 4 265 IPR014476 GO:0003680
Lal22g0417 275 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 220 - -
Lal22g0417 275 MobiDBLite consensus disorder prediction 21 56 - -
Lal22g0417 275 Pfam Plants and Prokaryotes Conserved (PCC) domain 96 210 IPR005175 -
Lal22g0417 275 Gene3D - 96 226 - -
Lal22g0417 275 CDD DUF296 96 208 IPR005175 -
Lal22g0417 275 ProSiteProfiles PPC domain profile profile. 90 230 IPR005175 -
Lal22g0417 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 273 IPR014476 GO:0003680
Lal22g0417 275 MobiDBLite consensus disorder prediction 21 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0417 Lal-Chr22 2703584 2704411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0417 56 271 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 50.862 2.81e-70 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0417 - - gmx:100811053 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0417 22 2703584 2704411 Lal22g0417 22 2703584 2704411 ECH
Lal18g1179 18 14685799 14686584 Lal22g0417 22 2703584 2704411 LSH
Lal22g0417 22 2703584 2704411 Lal6g0444 6 2802198 2803052 LSH
Lal22g0417 22 2703584 2704411 Lal21g0618 21 4644210 4646551 PCT