Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0411 ATGGTTTTAAAGATGGCGAAGCAGAAGAGAAAGATAAAGAAAATTGACAATGTAACTGCGAGGCAAGTAACATTTTGTAAGAGAAGGAGAGGGATCTTCAAGAAAGCTCAAGAGCTTTCTGTGTTGTGTGATGCTAAAGTTGCTCTCCTTGTTTTCTCAGCTACAGGGAAACTCTATGAATACGCTAGCTCTAGTATGAAGGACATACTTACAAGGTATAATCAGCATTTTCATGACATCAACCAAACACAAGGACCTCTAGAACTGCAGGTGGAGGATAACAATTACACTGAATTGAAGAAGGAAGTTGCAGCTAAAACCCAACAACTAAGGCGTATAAAAGGTGAGGCTTTTGAAGGGCTAAACCTAGATGATGTGCAGCATCTAGAGGAAAGACTTGAAGATGGACTCAAACGTGAAAAGCTGATTGAGAATGAGATTGTTGCACTTCAGAAAAAGGGAATCAAGTTAGAAGACGAGAGAAAGCAGTTAAAGCAAAAGATGATTATGATTTCCAAAGGAAAAATTCCTTCAATGGTGGACTCTGATATTGCCATTCAGGAAACTATTTCATCTGACTCTATGAATAATGTTTGCAGCTGCAACAGTGGCCCTTCTATTGAGGATCATTCATCTGACACATTTCTTAAGTTAGGGTTGCCCTTCCCAGATTGA 675 0.3926 MVLKMAKQKRKIKKIDNVTARQVTFCKRRRGIFKKAQELSVLCDAKVALLVFSATGKLYEYASSSMKDILTRYNQHFHDINQTQGPLELQVEDNNYTELKKEVAAKTQQLRRIKGEAFEGLNLDDVQHLEERLEDGLKREKLIENEIVALQKKGIKLEDERKQLKQKMIMISKGKIPSMVDSDIAIQETISSDSMNNVCSCNSGPSIEDHSSDTFLKLGLPFPD 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0411 224 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 5 218 - -
Lal22g0411 224 Gene3D - 17 84 IPR036879 GO:0003677|GO:0046983
Lal22g0411 224 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Lal22g0411 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 61 IPR002100 GO:0003677|GO:0046983
Lal22g0411 224 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Lal22g0411 224 CDD MADS_MEF2_like 6 79 IPR033896 GO:0000977|GO:0045944
Lal22g0411 224 Coils Coil 126 167 - -
Lal22g0411 224 SUPERFAMILY SRF-like 5 77 IPR036879 GO:0003677|GO:0046983
Lal22g0411 224 Pfam K-box region 91 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal22g0411 224 ProSiteProfiles K-box domain profile. 89 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal22g0411 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 5 218 - -
Lal22g0411 224 Coils Coil 89 116 - -
Lal22g0411 224 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Lal22g0411 224 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Lal22g0411 224 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0411 Lal-Chr22 2672210 2676367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0411 5 221 MADS-box Gene Family AT4G24540 49.778 1.91e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal22g0411 K-box 6.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0411 - - tcc:18591803 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0411 22 2672210 2676367 Lal22g0411 22 2672210 2676367 ECH