Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0400 ATGTACGGTCACGCCACGCCAACGAACATGCCCAACCAAATTGGCGCTGACGAAAACGACGATGGATCCGGCGAGCACTCTATGGATCACATTCAGTATGAAACTCATGCCCTTGGTGATGGTAACGGTGCAATTGGTGGGGGCGTTGAAGATATTGCTGCTGCTGATGTATATGTCTCCGGTGACGGTGGTGCTGGCGACCACGAATTTGCTGTTCAACCCTGCGATGGGTCTAACCAGCTAACGCTGTCGTTTCGTGGTCAAGTTTATGTTTTTGATTCTGTTACACCTGATAAGGTTCAATCAGTATTCTTACTGTTGGGTGGTTGTGAATTGCCTTGCCCGGATACAGCACCTCAACATGATCAAAGGGGTCCCTTGGTAAAGCAAGCTCCAGTGGAATATCCTGCAAGGTGTAGTCAACCACAGCGGGCAGCCTCATTAAGCAGGTTTCGGAGGAAGAAGAAAGAGCGATGCTTTGATAAGAAAATTAGATATGAAGTACGCCAAGAAGTTGCGTGCAGGATGGACCGTAAAAAAGGCCAGTTTACTTCGTCTAAGAAACAAGATGGAGCTAGTAGTCTGGGTGCTGGCCAGGAGTCAGGGCAGGATGATAGTCCATCAGAAACTGCATGCACACATTGTGGCATTAGTTCAAAATCTACCCCAATGATGCGGCGAGGGCCAAATGGTCCAAGGTCACTATGCAACGCTTGTGGACTTTTTTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCTAAGAGAAACCAGGAACTCGCTCTTGTACCAGCTCAACAGGCTGAAGGTAATAATAACTCAGTCTGTGGGACTGCCATCCATGCACATAACAACCTTGTTTCTTTCTCTGATAATGATAACCCAGATTTGGTACCTGGTCGCTGA 903 0.4784 MYGHATPTNMPNQIGADENDDGSGEHSMDHIQYETHALGDGNGAIGGGVEDIAAADVYVSGDGGAGDHEFAVQPCDGSNQLTLSFRGQVYVFDSVTPDKVQSVFLLLGGCELPCPDTAPQHDQRGPLVKQAPVEYPARCSQPQRAASLSRFRRKKKERCFDKKIRYEVRQEVACRMDRKKGQFTSSKKQDGASSLGAGQESGQDDSPSETACTHCGISSKSTPMMRRGPNGPRSLCNACGLFWANRGALRDLSKRNQELALVPAQQAEGNNNSVCGTAIHAHNNLVSFSDNDNPDLVPGR 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0400 300 MobiDBLite consensus disorder prediction 186 225 - -
Lal22g0400 300 ProSiteProfiles GATA-type zinc finger domain profile. 206 265 IPR000679 GO:0006355|GO:0043565
Lal22g0400 300 ProSiteProfiles Tify domain profile. 74 109 IPR010399 -
Lal22g0400 300 ProSiteProfiles CCT domain profile. 144 186 IPR010402 GO:0005515
Lal22g0400 300 MobiDBLite consensus disorder prediction 1 16 - -
Lal22g0400 300 Pfam tify domain 77 108 IPR010399 -
Lal22g0400 300 Pfam GATA zinc finger 212 247 IPR000679 GO:0006355|GO:0043565
Lal22g0400 300 SMART tify_2 74 109 IPR010399 -
Lal22g0400 300 CDD ZnF_GATA 211 257 IPR000679 GO:0006355|GO:0043565
Lal22g0400 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 208 263 - -
Lal22g0400 300 Pfam CCT motif 144 186 IPR010402 GO:0005515
Lal22g0400 300 SMART GATA_3 206 259 IPR000679 GO:0006355|GO:0043565
Lal22g0400 300 MobiDBLite consensus disorder prediction 178 226 - -
Lal22g0400 300 PANTHER GATA TRANSCRIPTION FACTOR 25 18 279 - -
Lal22g0400 300 MobiDBLite consensus disorder prediction 1 27 - -
Lal22g0400 300 Gene3D - 203 261 IPR013088 GO:0006355|GO:0008270
Lal22g0400 300 PANTHER GATA TRANSCRIPTION FACTOR 28 18 279 IPR045280 GO:0006355
Lal22g0400 300 ProSitePatterns GATA-type zinc finger domain. 212 239 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0400 Lal-Chr22 2608366 2614831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0400 1 297 Tify Gene Family AT4G24470 46.541 7.40e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal22g0400 CCT 1.6e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0400 - - lang:109356321 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0400 22 2608366 2614831 Lal22g0400 22 2608366 2614831 ECH
Lal22g0400 22 2608366 2614831 Lal6g0439 6 2769645 2773187 LSH