Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0397 ATGTCATCTCAAGCAGTGCAGTTGAGGATAGAGGACAATCATGTGGTTATGGACAATGGGATACTGCAAGTGTATTTATCCAATCCTGGTGGATTTGTCACTAGAATACAATATAATGGCATTGATAATATACTAGAAGATCTTAATGAAGATTTTAATAGAGGGTATTGGGACATTGTTTGGAGTGAAGCAGGAAGTACAGGAACAACTGGAACATTTGAGAGAATTGTAGGAACAAAGTTTAATGTTATAGTGGAAAATGAGGAACAGGTTGAAATCTCATTTACAAGAATGTGGGATCCATCTCTGAAGGGAAAGCTTTCAGCTGTAAATATTGACAAAAGGTATGTTATGCTCCGAAATTCCTCAGGCTTCTACTCTTATGGCATCTTTGAACACCTTAAGGAGTGGCCTGCTTTCAACATACCTCAGATTAGGATTGTTTTTAAGCTTCGAAAAGACAAATTTCATTATATGGCAGTGGCAGATGATAGACAAAGATTCATGCCTCTCCCAGATGACAGATTACCTACAAGAGGTAAAGAACTAGTTCCACCAGAAGCAGTTTTACTTCTCCATCCTGTGGAGCCAGAGTTCAAGGGAGAGGTGGATGACAAGTACCAATACTCAAATGAAAACAAAGATCTTAAGGTCCATGGTTGGATAAGCTCTGAATCTGAAATTGATCCACCCATGGGTTTCTGGGTAATCATACCCAACAATGAATTTCTTTCAGGTGGTCCTGTTAAACAGAACCTTACCTCCCATGTTGGCCCTATCAGCCTTGCAATGTTCATTAGTGCTCATTATGCTGGAGAGGATATTGTTCTTAAACTCAAACCAAATGAACCATGGAAGAAAGTTTTTGGGCCAACATTTTTCTATCTTAATAACAACACTTTGTTGGATTCTGAAGACCCATTGGAGCTATGGGAGGATGCTAAACTTCAGATGACTGAGGAAGTTCAAAATTGGCCCTATGATTTTCCAGCTTCAGAGGATTTTCACAAGTCTAGCCAAAGAGGCAGTGTCTCTGGCACATTACTGGTTAGAGACAGGTGCCTAAGTAATGATGACATATTTGCACAAGGAGCATATATAGGACTGGCACCACAAGGAGAAGCTGGGTCCTGGCAAAGAGAAAGCAAGGGTTATCAATTCTGGACTCGAACAGACGAGGAAGGAAACTTCACAATCGATAATATACGCGGCGGGGATTACAATCTCTATGCCTGGGTTCCAGGTTTCATTGGAGAGTATTGGAACAATGTTGTATTCACCATAACCCCAGGTTGTGAAATAAATGTTGGTGACATAGTTTTTGAGCCCCCAAGACATGGTCCAACATTATGGGAGATAGGCATTCCTGATCGCTCTGCTGCTGAGTTCTATGTTCCAGATCCTAATCCAAAGTACATTAACAAGCTTTATGTCAACCATCCAGACAAGAAGAATGATGATGGAAGCTACAAAGGAACTACATGGCAAATCAAGTTCAACCTTGATGAGGTGGAGACAAGTGGAATCTATAAATTGAGGTTGGCTCTTGCAAGTGCCAATGTCTCTGAATTACAGGTTAGAGTAAATGATCAAAAACAAGATCCTCCACTATTTACTACAGGGGTGATTGGTAAGGACAATGCAATAGCTAGACATGGAATTCATGGACTATACTGGTTGTTCAACATTGATGTGCCAGGTCTTCTACTAAAGGAAATGGATAATACTATATATCTAACACAAACTATAGCTACTGAACCTTTGGCCTTATTCCATGGGGTAATGTATGACTATATTCGTTTAGAAGCCCCCAAATCTTTTCTTCCCATAGAGAAGATGTTAAATTAG 1848 0.4004 MSSQAVQLRIEDNHVVMDNGILQVYLSNPGGFVTRIQYNGIDNILEDLNEDFNRGYWDIVWSEAGSTGTTGTFERIVGTKFNVIVENEEQVEISFTRMWDPSLKGKLSAVNIDKRYVMLRNSSGFYSYGIFEHLKEWPAFNIPQIRIVFKLRKDKFHYMAVADDRQRFMPLPDDRLPTRGKELVPPEAVLLLHPVEPEFKGEVDDKYQYSNENKDLKVHGWISSESEIDPPMGFWVIIPNNEFLSGGPVKQNLTSHVGPISLAMFISAHYAGEDIVLKLKPNEPWKKVFGPTFFYLNNNTLLDSEDPLELWEDAKLQMTEEVQNWPYDFPASEDFHKSSQRGSVSGTLLVRDRCLSNDDIFAQGAYIGLAPQGEAGSWQRESKGYQFWTRTDEEGNFTIDNIRGGDYNLYAWVPGFIGEYWNNVVFTITPGCEINVGDIVFEPPRHGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKKNDDGSYKGTTWQIKFNLDEVETSGIYKLRLALASANVSELQVRVNDQKQDPPLFTTGVIGKDNAIARHGIHGLYWLFNIDVPGLLLKEMDNTIYLTQTIATEPLALFHGVMYDYIRLEAPKSFLPIEKMLN 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0397 615 Pfam Polysaccharide lyase family 4, domain III 449 601 IPR029411 -
Lal22g0397 615 PANTHER LG27/30-LIKE GENE 483 606 - -
Lal22g0397 615 PANTHER LG27/30-LIKE GENE 1 483 - -
Lal22g0397 615 Pfam Rhamnogalacturonate lyase family 4 203 IPR010325 -
Lal22g0397 615 CDD RGL4_M 340 439 IPR029413 -
Lal22g0397 615 CDD RGL4_C 451 602 - -
Lal22g0397 615 SUPERFAMILY Galactose mutarotase-like 12 306 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lal22g0397 615 Coils Coil 514 534 - -
Lal22g0397 615 Gene3D - 337 436 - -
Lal22g0397 615 SUPERFAMILY Starch-binding domain-like 337 437 IPR013784 GO:0030246
Lal22g0397 615 Gene3D - 447 602 - -
Lal22g0397 615 SUPERFAMILY Galactose-binding domain-like 447 602 IPR008979 -
Lal22g0397 615 CDD RGL4_N 8 299 - -
Lal22g0397 615 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 483 - -
Lal22g0397 615 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 483 606 - -
Lal22g0397 615 Gene3D - 5 281 IPR014718 GO:0030246
Lal22g0397 615 Pfam Polysaccharide lyase family 4, domain II 363 435 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0397 Lal-Chr22 2585890 2591694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0397 1 604 Polysaccharide Lyase AT1G09890 59.720 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0397 K18195 - gmx:100815677 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0397 22 2585890 2591694 Lal22g0397 22 2585890 2591694 ECH