Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0393 ATGCCTCCGCCGCAGCTAGGCATAGGGGATGAGGAAGGTGAAAGCAATGTAACTTTGTTGGTTTCTTCCTCAACAACCATGGAAAGTGTGTGTCTTAATGGCTCAAAATTAAAAGAATTCAATTACATGGGGTTATCTGATTCTTCTTCGGTGGATAGTTCAGTTCCATCATTCTCATCGCCAGATGAGAATAAAAGTAATCTGAATCTAAAAGCTACTGAGCTTAGATTGGGGCTTCCTGGATCTCAGTCTCCTGAAAGAGATTCAGATCTCTGCTTAAGAAGTTCAACTCAATTTGATGAAAAGCCGCTGTTTCCTTTGCGTCCAGCGGTCGATGATCATCATCCATCGTCAAAGACTGCTGTTTTGGGTAACAAAAGAGGGTTCTCAGATGCCATGAGTGAGTTCTCAGAGGTAAAATTGATCGTTAGTTCGGATGCGAACACAATATTGTCATCCAGGCCTTCTCTTGGTGTGGGATTAAAACCTTCCTCTATGCTTGAGAATGTCGGGGCTCAGCAAGAGGTAGCAACAACGAAGGCTGCTGAAAGCAGACCAACACTTAATGGTTCTGCAAATAATAATAACAGTGCGCCTGCGACCAAGGCACAGGTTGTAGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCATTGGCTACTACTTCAAAGAATGTTGTTGAAGTAGATAGAAAAGTAGGGTCCACTACACTCTTTGTCAAAGTCAGTATGGATGGTGCTCCTTATTTAAGAAAAGTGGACTTGAAGAATTACTCAGAATATCCAGAATTATCTTCTGCTCTTGAGAAAATGTTCACCTGCTTTACAATAGGGCGATGTGGATCTCATGGAAATCTGAATGAAACCAAGCTGAAGGATCAGCTTCCCGGATCAGAATATGTTCTTAGCTATGAGGATAAAGATGGTGACTGGATGCTTGTGGGTGATGTTCCCTGGAAGATGTTTATTGATACATGCCGGAGGCTGAGGATCATGAAGACCTCCGATGCCATTGGTCTAGCAGCACCCAAAGTTGTTGAAAAAAGTAAGGGGAGGAACTAA 1062 0.4266 MPPPQLGIGDEEGESNVTLLVSSSTTMESVCLNGSKLKEFNYMGLSDSSSVDSSVPSFSSPDENKSNLNLKATELRLGLPGSQSPERDSDLCLRSSTQFDEKPLFPLRPAVDDHHPSSKTAVLGNKRGFSDAMSEFSEVKLIVSSDANTILSSRPSLGVGLKPSSMLENVGAQQEVATTKAAESRPTLNGSANNNNSAPATKAQVVGWPPIRSFRKNSLATTSKNVVEVDRKVGSTTLFVKVSMDGAPYLRKVDLKNYSEYPELSSALEKMFTCFTIGRCGSHGNLNETKLKDQLPGSEYVLSYEDKDGDWMLVGDVPWKMFIDTCRRLRIMKTSDAIGLAAPKVVEKSKGRN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0393 353 Pfam AUX/IAA family 73 341 IPR033389 -
Lal22g0393 353 PANTHER AUXIN-INDUCED PROTEIN 22 345 - -
Lal22g0393 353 SUPERFAMILY CAD & PB1 domains 235 333 - -
Lal22g0393 353 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 22 345 IPR003311 GO:0005634|GO:0006355
Lal22g0393 353 MobiDBLite consensus disorder prediction 179 202 - -
Lal22g0393 353 ProSiteProfiles PB1 domain profile. 237 334 IPR000270 GO:0005515
Lal22g0393 353 Gene3D - 232 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0393 Lal-Chr22 2570591 2574335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0393 223 331 B3 DNA Binding Superfamily AT2G46530 33.028 9.03e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal22g0393 AUX_IAA 1.7e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0393 K14484 - gmx:100815447 509.605