Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0390 ATGGGTAGAAAGAAAAGTAAACCTCGTCGATCAGGTGGGATAATACTAAAAACAAATGCTGCTGATACAGAATTGGATAAACAGAATGTTGAAGGAAGTAGTGAAGAAGCAAAGGATGATTTTGGTGACATTTATAAGTCTTATTTTGTTGAAATTGACCGGTCCGGTTGGTTGCCATGTGAACACCTTGATATTTCTGAGGTTGTTTTAAGGGATTTAAATTTAAGAGAAGGATTTTCTGATTTTGAACTTCCTCAGAATTTTTGCCAGGATCCACAGTACTCGTTAAGATTTCGGGTGTATAATGTCAACAGTGTTCTCAGTCGAATTAAATTAGGCCATTGGCCTGTGTTACCGTATACTGATATTCATCTAGAGTTAGTGAAAAGAGTAACCACGGACAATGTAGAAACATGTACAGTGTTGTTGTCTGGGCTTTTTGATGGATCAGATGAAGGTGTTTCTGGTCTTGTTCACTTGGCAAGTTTGAAAGTTGTCATGTTGAGGCCAATTCTTCGGATTAGGTTTTCTGAGGGTACTCCTTCCATCAGGGTAAGGATTGAGCTACTGAAGAGTGCCTTTGATGCATGTGAGTCACTTCTTGACAGTTCTAGGCAACTATGGAAAAAGAGTATGATGAATGTCATGTTTTGGCTACATCCAGAAATATTGACTTCAGAAGTTAGGTATGGGCTTGGTAGCTGCATGAAAATAGAAGTTGATCCACAGACAGAGATTGGAGATGACACTAGCTACACCAGAAAACATGCAAGGTTTGATCCTGCAGGTTTTTATGAAGCCATTAAACCTTCAAAAGCAGAACCAATGCTCAAAGATGTCATACCTGAGTTACTTCCTGAACTGAGGCCATATCAACGGCGTGCTGCTTTTTGGATGGTAAAACGGGAGAAAAGAATTGAAGAAAATCAGGGTGACAGAGAAAGAATACTGTTTCACTCTCCATTATGTGTGCCTGTGGATTTTCTGGAGACAAGTTCTAAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTGTGCCCAGAGACTTCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGATTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTTTGCTCACCGTAGATCGGCATCTGGAAATGACACACTAATTGATTCAGAGCCCCAAGTTAATGAGGATCAAAATGTTACTTTAAAAAGACTCAAAAAAGAGCGTGTGGAGTGCATATGTGGCGCTGTAAGCGAAAGTTTCGAATATCAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGAATGTGTTGGTTATTCACCTAAAGGGAAGTCTCTGAAATCAAAACAAGGACGCGAGAGCAAGACATATAAAACCACCATAGCTGAGAGGGACGGGGAATATGTATGTCAGATGTGCTCTGAACTAATACAAGCTACTCAATCTCCTATTGCCTCTGGTGCAACTCTTATTGTCTGCCCAGCTTCTATTTTACCCCAATGGCGCGATGAAATTATACGGATTCCCGTTCCTCTTGCTTGCTCTGTAATAATTCTCGGCGTGCGAGACACATCTTTGTCCTATACATCTCCGGTGGATATCAATAAACTTGTCAATGCTGACATTGTAATAACTACATATGATGTGCTTAAAGAGGATCTTTCCCATGATTCTGATCGACTAAAGGGTGATCGGCACCTTTTGAGATTTCAGAAAAGGTACCCAGTTATCCCAACTCTCCTTACCAGAATATACTGGTGGAGGATTTGTTTGGATGAGGCTCAAATGGTGGAAAGCAATGCCGCCGCCGCCACTGAAATGGCATTGAGACTCCATTCAAAGCATCGTTGGTGCATTACTGGGACCCCAATTCAGCGGAAGCTTGATGATTTATATGGACTTCTTAGATTCCTAAAAGCTAGTCCTTTCAATATATACAAGTGGTGGACTGAAGTTATCCGAGATCCTTATGAGCTATTGCTCCATACTCTTCTGCAGAAGGGTGATAGGGGAGCTATGGAATTCACACATAGATTTTTCAAACAAATCATGTGGCGTTCTTCTAAGGAACACGTTTCAGATGAATTGGATCTTCCATCTCAGGAGGAGTGCCTCTCGTGGCTTTCACTCTCACCAGTAGAAGAGAACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCCCATGAAGTTATTGAAAGTTTGAGAAACGATATTCTTAATAGAAGAGTCCAGGGTTCTGTATCTATGAATGGGCCCTCTGATCCTTTAGTAACTCAAACAGAGGCAGGGAAGCTACTAAATGCTCTTCTGAAGCTTCGTCAGGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGTTTGCGTTCCCTACAGCAGACGCCCATGACCATGGAGGAAATATTAATGGTTCTTATAAGTAAGACTAAGGTAGAAGGCGAGGAAGCTCTTAGGAGGTTAGTTGTTGCCCTGAATGGGCTTGCAGCGATAGCTACAATACAAAGAGATTTTTCACAAGCGGCATTACTGTACAATGAAGCTCTAACTTTGGCTGAAGAGCATTCTGAAGATTTTCGTGTGGATCCTTTGTTAAATATCCATACTCATCATAATCTTGCTGAAATACTTCCACAGGCTGCTAATGTTCCTCTAGTATTGCCCGGCAATGGAGATAAATTCTCTGGAAGTTTTGCTGTTAAGACAACCAAAAAGCATTGTTTTGTAAATGATGATCATCGTCTTGACAAGAGGCAAAAAGTAAGTGACTGCGACAACACAAATTTCACAGTGGCTTCTGCAGAACCATCAGATGTGATGTCTAGCCTATCAGAAAATGACTTCAAGGAGGACCGTGAATTTGATAATTTATCTGTCAGTTCAGTCAAATCTCTGATAACAGAATGTGAAGATTTAAAGCAGAAATATTTAACTGTGTTCAAATCAAAGCTATCTGCAACTCAACAGGAGTTTCAAAATTCTTACACACAGGTTTGTAATGCATATAGAGACAGTAGAAAAGATCAGAATGAATTTTGGTGGCTAGAAGCACTTCAGCATGCTGAGCAGAACAAGGATTTTTCAACTGAATTGATTAGAAAGATTGAAGAAGCCATTTCGGGAACTTCAAACAATTCAAAGCCATCAAAAATAGCCTCTCGATATAGTACTAGGCTTAGCCAGGTTATTTTTATGCTAGCTTGTGGAGGTTATATTGGACGTTGTCATAGGATCCCATACTCGTCAGTTGTGACTGAACCAAAACTAGCAGGGACCAAGTGTATTACTAGTGATCTTTTACGTCTCCGGAGCATAAGCTCTCTGAAGTATCAAATCCAGACAGGTTTGGATCAGTTACAGGGCTCTAGGAAAGTGCTACTAGATCGACTGTTAGAAGTTAATCAGACAATGGAGAAACCAAAAGAAGATGATATCGAACGTGTGGGTAAATGTCAAAATTGTCAACCTAATTATGATGGTCCCCCATGCATTCTGTGTGAACTGGATGAATTGTTTCAGGATTATGAAGCAAGACTCTTTGTCCTTAAGAATGAACGTGGAGGAATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAAGACAGCATTAAATCATTTCCTCTCAAAACTATCAAAATCTAATCACAGTTCAACAGCAACCGAGATCGGTAATGAAGAAGAATCCCAAAAAAGGAATGTTGGACAAAGAGTTGTGGTTTCAAGATCAGCATCTGAATTGGAGCTTATTCTTGGAGTTATAAAGAGCTATTGCAAAGCTCGGCTAGGAAGGGATAGGTACTCAGCAGCCACCAAGCATTTACAAGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCTAGGTCATTGGCATTAGCTCAAGCTCAATATCTGCGAGCCCATGATGAAATAAAGATGGCGATTACCCGTTTGCACTTAAGGGCAAATGAAGATGATAAATCTCTTGATGCTTTAGGTGAAAATGAACTATTTGCCGCTAGCTCAAGCTTTTCCCATGATAAGTTTATGTCATTGACCTTGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTGCAAGCTAAGCAAAAACTGCCATTGGAAAGTCCAGATAGTTCTTCATTCACTCAAGGGACAACTGCAATGTCAAACTCCACAGAAGAGAAGGGCACACTCATACCTAAAGCTGACGATGAAACATGCCCAGTTTGTCAAGAAAAGCTTGGCAATAAAAAAATGGTATTTCAATGTGGGCATATTATGTGCTCTAAATGTAAGTCTTATGTGATCAAACTTTATGTTATTACTTATTCCTTACTTCCAAATAACAGGAACCTGAACAGTTTATTTGCTATGACAGAGAAAAGGCTTCAAGATAGCAACTCTCCTAATTGGGTGATGTGCCCAACATGTCGCCAACATACCGATTTTGGAAACATTGCCTATGCTGTTGATGTACAGAATGAATCTTCCAATTCTTCAGTACTACATACAATTGACAGCTGTGAAAAAAGTGAAGCATCCATTAGTGTTAAAGGGTCATACGGAACTAAGATTGAAGCAGTTACCAGAAGAATTTTGTGGTTAAAGGCTAAAGATCATAAATCAAAAGTTCTTGTGTTTTCAAGTTGGAATGATGTACTTGATGTATTGGAACATGCCTTTGCTGCCAATAACATTACCTTCATCCGGATGAAAGGGGGCAGAAAAGCACATGTTGCCATCAGTCAATTTAGAAAAGGATGTGAGAGTTCAACATCAAAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGTGCCAATGGCCTCAATCTTTTAGAAGCACAGCATGTGGTCCTTGTAGAGCCATTGCTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGAGTACATCGTATTGGACAAAAACATAAGACCCTCATTCATCGTTTCATTTTCTTAAAATACCTTTCCAAGCTTTGCTTGAATGAAAAGAATGTAACTTCATTACCTTCTTGCTTGTGGAGAAAGGTGAAAGACACAGTTGAAGAGAGTATATACAAATTGAACAGAAACAGAAGTAATCATTCATTCATTAGTGGGAACACCAAAAATCAAGATCAACCTGTTTTGACCCTCAAGGATGTAGAATCATTACTTGAAAGATCCCCATTAACTATGCCAGAAAGTGATGAAAATCCTAACACAAATGCAAATCTAAGGCACTTGCCACCATCAATGGCTGCAACTATTGCTGCTGAGAGGAGAATCAATGAGCAAAGCACATGA 5304 0.3993 MGRKKSKPRRSGGIILKTNAADTELDKQNVEGSSEEAKDDFGDIYKSYFVEIDRSGWLPCEHLDISEVVLRDLNLREGFSDFELPQNFCQDPQYSLRFRVYNVNSVLSRIKLGHWPVLPYTDIHLELVKRVTTDNVETCTVLLSGLFDGSDEGVSGLVHLASLKVVMLRPILRIRFSEGTPSIRVRIELLKSAFDACESLLDSSRQLWKKSMMNVMFWLHPEILTSEVRYGLGSCMKIEVDPQTEIGDDTSYTRKHARFDPAGFYEAIKPSKAEPMLKDVIPELLPELRPYQRRAAFWMVKREKRIEENQGDRERILFHSPLCVPVDFLETSSKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRRSASGNDTLIDSEPQVNEDQNVTLKRLKKERVECICGAVSESFEYQGLWVQCDICDAWQHAECVGYSPKGKSLKSKQGRESKTYKTTIAERDGEYVCQMCSELIQATQSPIASGATLIVCPASILPQWRDEIIRIPVPLACSVIILGVRDTSLSYTSPVDINKLVNADIVITTYDVLKEDLSHDSDRLKGDRHLLRFQKRYPVIPTLLTRIYWWRICLDEAQMVESNAAAATEMALRLHSKHRWCITGTPIQRKLDDLYGLLRFLKASPFNIYKWWTEVIRDPYELLLHTLLQKGDRGAMEFTHRFFKQIMWRSSKEHVSDELDLPSQEECLSWLSLSPVEENFYQRQHETCVRDAHEVIESLRNDILNRRVQGSVSMNGPSDPLVTQTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQTPMTMEEILMVLISKTKVEGEEALRRLVVALNGLAAIATIQRDFSQAALLYNEALTLAEEHSEDFRVDPLLNIHTHHNLAEILPQAANVPLVLPGNGDKFSGSFAVKTTKKHCFVNDDHRLDKRQKVSDCDNTNFTVASAEPSDVMSSLSENDFKEDREFDNLSVSSVKSLITECEDLKQKYLTVFKSKLSATQQEFQNSYTQVCNAYRDSRKDQNEFWWLEALQHAEQNKDFSTELIRKIEEAISGTSNNSKPSKIASRYSTRLSQVIFMLACGGYIGRCHRIPYSSVVTEPKLAGTKCITSDLLRLRSISSLKYQIQTGLDQLQGSRKVLLDRLLEVNQTMEKPKEDDIERVGKCQNCQPNYDGPPCILCELDELFQDYEARLFVLKNERGGIISSAEEAVDFQKKKTALNHFLSKLSKSNHSSTATEIGNEEESQKRNVGQRVVVSRSASELELILGVIKSYCKARLGRDRYSAATKHLQVFEGMRKEFGHARSLALAQAQYLRAHDEIKMAITRLHLRANEDDKSLDALGENELFAASSSFSHDKFMSLTLLSQIKGKLRYLKGLVQAKQKLPLESPDSSSFTQGTTAMSNSTEEKGTLIPKADDETCPVCQEKLGNKKMVFQCGHIMCSKCKSYVIKLYVITYSLLPNNRNLNSLFAMTEKRLQDSNSPNWVMCPTCRQHTDFGNIAYAVDVQNESSNSSVLHTIDSCEKSEASISVKGSYGTKIEAVTRRILWLKAKDHKSKVLVFSSWNDVLDVLEHAFAANNITFIRMKGGRKAHVAISQFRKGCESSTSKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKHKTLIHRFIFLKYLSKLCLNEKNVTSLPSCLWRKVKDTVEESIYKLNRNRSNHSFISGNTKNQDQPVLTLKDVESLLERSPLTMPESDENPNTNANLRHLPPSMAATIAAERRINEQST 1767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0390 1767 SUPERFAMILY FYVE/PHD zinc finger 410 483 IPR011011 -
Lal22g0390 1767 Pfam Helicase conserved C-terminal domain 1532 1646 IPR001650 -
Lal22g0390 1767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1406 1500 IPR013083 -
Lal22g0390 1767 Gene3D - 345 398 IPR038718 -
Lal22g0390 1767 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1532 1691 IPR001650 -
Lal22g0390 1767 MobiDBLite consensus disorder prediction 1729 1749 - -
Lal22g0390 1767 ProSitePatterns Zinc finger PHD-type signature. 414 480 IPR019786 -
Lal22g0390 1767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 668 IPR027417 -
Lal22g0390 1767 MobiDBLite consensus disorder prediction 1733 1748 - -
Lal22g0390 1767 Gene3D - 1502 1748 IPR027417 -
Lal22g0390 1767 SMART ring_2 1412 1482 IPR001841 -
Lal22g0390 1767 Pfam SNF2-related domain 291 790 IPR000330 GO:0005524|GO:0140658
Lal22g0390 1767 Coils Coil 1024 1044 - -
Lal22g0390 1767 SMART helicmild6 1560 1646 IPR001650 -
Lal22g0390 1767 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1749 - -
Lal22g0390 1767 MobiDBLite consensus disorder prediction 1380 1399 - -
Lal22g0390 1767 MobiDBLite consensus disorder prediction 1223 1242 - -
Lal22g0390 1767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 480 IPR013083 -
Lal22g0390 1767 CDD PHD_TCF19_like 415 480 - -
Lal22g0390 1767 MobiDBLite consensus disorder prediction 1 20 - -
Lal22g0390 1767 SMART ultradead3 284 655 IPR014001 -
Lal22g0390 1767 Gene3D - 481 715 IPR038718 -
Lal22g0390 1767 CDD SF2_C_SNF 1526 1657 - -
Lal22g0390 1767 SMART PHD_3 413 481 IPR001965 -
Lal22g0390 1767 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 464 648 IPR014001 -
Lal22g0390 1767 ProSiteProfiles Zinc finger RING-type profile. 1412 1483 IPR001841 -
Lal22g0390 1767 CDD DEXQc_SHPRH 288 694 - -
Lal22g0390 1767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 1660 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0390 Lal-Chr22 2543849 2555621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0390 488 788 RAD5 or RAD16-like Gene Family AT5G22750 29.836 5.16e-32 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal22g0390 SNF2_N 8.7e-83 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0390 K15710 - gmx:100776659 2642.84