Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0388 ATGGAAACTTTGGATGTTAATTCAGACCAATATGCTACCATGTCTTCTAATTCATCATCATCTTCTTCTGGAGGTGTTAATAGTAGTGATAACAATGTTAACAGTAATAGTGGGGCTGGCACTGTATCCTGGTATGGAATGAATTTACCCTCTGTGAGAACTTTGCGTTCTCCAATTTCCTTTTTGTTGGAGAACTCTGGCATCCTAACCTCAGCCTCTGATTCTGAGGCTGTGATTGTCAACAATGGAGTTACAGGTTCGGAGTTACGGTCTCAGCTTCAAACTCAATCACTCAATGGTGGTGGTGCTTCAGCTGCTGCTGTTGGAACACCCTGCGTCAATAGTGCTGGTGAAGTTGCAATAAGGATCATTGGATCTGGAGAGAATGATCACAGTGTGGTAGGGTCTGGTTCTCTTTCATCATCATCATGGAATCGGCATGGAGAAGTTGGTTATGGTGGATATGATGATGTCGTGAGGGATAGAGATGGAATGCCTGGATTGGTTGATGGTGGTGAGGATCATGGTGGAATTGCTGCTGGTGAGAGGGTTCCTCATGTGTCTTCATCTTCGTCACTGGCTGGTAGTGGACAAGTTGGTGGAGAGGCTGCTGGGAATGGCGTAGAAAGTAACGGTAGGGAGTTGTCGTCCTACCAGAGGTATGACATTCAGCAGATTGCGAAGTGGATTGAGCAGATTCTGCCTTTCTCGCTCTTGTTGTTCGTTGTTTTCATCCGTCAGCATTTGCAAGGTTTCTTTGTCACAATCTGGGTATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAGGCAGACAGCTTTAAAGGGAGATAGGAGAGTATTTATCCTTGTTGGTATCTCAGTTGCCTTCATGCTTCATGTGATGTGCATTTATTGGTGGTATCGAAATGATGATCTTTTATACCCACTGGTCATGGTTCCCCCAAAAGCCACACCTTTTTGGCATTCAATATTCATCATTTTGGTTAATGATACATTGGTGCGGCAAGCAGCAATGACTTTCAAGTGTTTTCTGCTTATATATTACAAAAATAGCAGAGGTCAAAACTTCCGTCGGCAGGCTCAAATGTTGACTCTGGTTGAGTACACATTGCTGCTGTATCGTGCCTTGCTTCCCACACCAGTTTGGTACCGGTTTTTCTTGAACAAGGATTATGGCAGTCTCTTTTCGTCACTGACCACTGGGTTGTATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGGTTAAATGCTTTTTTTCTGCCGTGAAAGCGCTATCAAGAAAGGATGTTAACTATGGGGTTTGTGCCACAATGGAACAGGTTAATGCCGCTGGTGACCTATGTGCTATATGCCAGGAGAAGATGCATGCCCCCATCTTGTTGCGCTGTAAACACATTTTCTGCGAAGAGTGTGTATCAGAATGGTTTGAGAGAGAAAGGACATGCCCACTTTGTAGAGCATTGGTAAGACCTGCTGATCTGAGAACCTTTGGAGATGGATCTACAAGTCTCCTATTTCAGTTGTTTTAA 1536 0.4362 METLDVNSDQYATMSSNSSSSSSGGVNSSDNNVNSNSGAGTVSWYGMNLPSVRTLRSPISFLLENSGILTSASDSEAVIVNNGVTGSELRSQLQTQSLNGGGASAAAVGTPCVNSAGEVAIRIIGSGENDHSVVGSGSLSSSSWNRHGEVGYGGYDDVVRDRDGMPGLVDGGEDHGGIAAGERVPHVSSSSSLAGSGQVGGEAAGNGVESNGRELSSYQRYDIQQIAKWIEQILPFSLLLFVVFIRQHLQGFFVTIWVSAVMFKSNEIVKRQTALKGDRRVFILVGISVAFMLHVMCIYWWYRNDDLLYPLVMVPPKATPFWHSIFIILVNDTLVRQAAMTFKCFLLIYYKNSRGQNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVKCFFSAVKALSRKDVNYGVCATMEQVNAAGDLCAICQEKMHAPILLRCKHIFCEECVSEWFERERTCPLCRALVRPADLRTFGDGSTSLLFQLF 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0388 511 MobiDBLite consensus disorder prediction 187 209 - -
Lal22g0388 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 428 497 IPR013083 -
Lal22g0388 511 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 16 511 - -
Lal22g0388 511 SUPERFAMILY RING/U-box 441 493 - -
Lal22g0388 511 ProSitePatterns Zinc finger RING-type signature. 465 474 IPR017907 -
Lal22g0388 511 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 16 511 IPR044235 GO:0061630|GO:1904294
Lal22g0388 511 CDD RING-HC_RNFT1_like 449 488 - -
Lal22g0388 511 Pfam Zinc finger, C3HC4 type (RING finger) 448 490 - -
Lal22g0388 511 SMART ring_2 450 487 IPR001841 -
Lal22g0388 511 ProSiteProfiles Zinc finger RING-type profile. 450 488 IPR001841 -
Lal22g0388 511 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0388 Lal-Chr22 2532154 2538270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0388 55 511 C3H Transcription Factor Family AT5G01960 59.653 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0388 - K22379 gmx:100784614 573.548