Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0383 ATGGGGTTGCATGACAAAGCGCGTGGGAATGAGGTGCCAGTGTTGTCTCTGAGTTCATTGCCATTAGGGTTTCGATTTCGACCAACGGATGAGGAGCTTATTGATTATTATTTACGACAGAAAATCAATGGGAATGATGATCATGTTTGGGTCATTCGTGAAATTGATGTTTGTAAATGGGAGCCTTGGGATTTGCCTGATTTGTCAGTGGTACAGAACAAGGATCCGGAGTGGTTCTTCTTCTGTCCACAGGACCGCAAGTATCCAAATGGACATCGGTTGAACCGGGCAACAACTCATGGATACTGGAAGGCGACAGGCAAGGATCGCAAAATTAAGTCCGGCTCCACCTTGATTGGAATGAAAAAGACTCTAGTTTTTCATACCGGCCGCGCTCCTAAAGGGAAGAGAACAAATTGGGTTATGCATGAGTACAGACCTACCCTAACAGAGCTTGATGCTACCAATCCTGGACAGAATCCATATGTCATTTGCCGATTATTTAAGAAGCAAGATGAGAGTCTTGAAGTTTCAAAGTGTGATGAAATGGAGCAGGCTGCTTCAACTCCTATGACTGCTAATCACACTCCAGAAGAAATACAATCTGATCCAACAATGGTTCCAGTATCTTCTTCACATGCTACTGAATATGATAAGCAGGTAGCAGTTATTGCTGAGAACTCTGAGGAAGCAATATCCAATGTTATAACCTCAGTCGATTCCCATCGTGACAGACGTGATGTTTATGGTGCACAAAATCAAATTGCAGAACCACCTGCTCAGGTTGTTCAGCCATTGAACGGGAACTTACTTTATCCGGCACTCGAGCATTTGGATGACGATGTGTTCTCCTCAGTCCATGTGCATACTCCTCCAGAATTTTCTTATCATGCAAACAAGGAATCAGATGCCAGTTCTGGGCTGCAACTTCAGAATGGTACAAATGAGATAGATATTACAGACTATTATGACTTGATTATTGATGACTTCTACATCGAGGAGTCTACAAGCCAAAACCCGAACCCTGCCTTGTTTACTGTTAAGGACAATGGATCATGCATTAAATCAGATGTGCAAATGGCAAATTCAAATCATATGCAGCCATTTCATGCTGCTTATCCTGAGGAGTCAGTCAATAGAAACACTTCTCTGTTGGCGAGCGACGGATTTTTCAACGGCATTGCCTCTGACCTTAGTGGCAATGAGCAGAAAAGCAATGCAGGGTTCTTGCAAAACGATTCCCGCATGTTTTCCTCAAATAATGCTGGTATGGGCGAAGTGTACAATGGGGTCAATGATTATGATCAAGCAAGAAACATAAAAATGGTTGTTAATGGGGATACCGGAATCAACAGAGGAACTCAACTAGTACAAAATGAACTGCCAAACATCAACACCAAGGTGCAATTGCGTAACAGGAAAATACAATCAGAAGGATTCGTTGCGCATCGGCGCAGTTGTTCCAATGAGGCAGCACAAGTTGGGTCAAAATCAACCTTTGCTGGGGAGAGTGAAGCTTCAGAAAACCATGGTGCTGATGGGAGCACAATTGTTACCGATGACGCCGATGAACTCGAAATGCCATCTCCTGTGTCATTTACTGTGGGACATTTCTTCTCTAGAGTACAAGTTGATTTGGAAGACTCCCTGGGATCAGAACATTCCCTGGAATCAGAACACTCCCTGGAATTAGAACACTCCCTGGAATCAGGACACTCCCTGGAATCAGGACACTCCCTGGAATCAGGACACTCCCTGGAATCAGGACACTCCCTGGAATCAGAACACTCCCTGGAATCAGAACACTCCCTGGAATTAGGACACTCCCTGGAATCAGGACACTCCCTGGAATCAGGACACTCCCTGGAATCAGAACACTCCCTGGAATCAGAACACTCCCTGGAATCAGCACACTCCCTGGAATCAGGACACTCCCTGGAATCAGGACACTCCCTGGAATCAGAACACTCCCTGGAATCAAAAGACCACACATTGAAAATAAAGTACAGTTACTCATCAAAGGCTTCATCAAATCCAAACATGTGGTCTTCTGTTATTACACTTTCAGCAGTTGTACTTGTCTTGCTAGTATTCCTAGCTAATATATGGGGATATCTTCAGTTTTAA 2127 0.4415 MGLHDKARGNEVPVLSLSSLPLGFRFRPTDEELIDYYLRQKINGNDDHVWVIREIDVCKWEPWDLPDLSVVQNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRKIKSGSTLIGMKKTLVFHTGRAPKGKRTNWVMHEYRPTLTELDATNPGQNPYVICRLFKKQDESLEVSKCDEMEQAASTPMTANHTPEEIQSDPTMVPVSSSHATEYDKQVAVIAENSEEAISNVITSVDSHRDRRDVYGAQNQIAEPPAQVVQPLNGNLLYPALEHLDDDVFSSVHVHTPPEFSYHANKESDASSGLQLQNGTNEIDITDYYDLIIDDFYIEESTSQNPNPALFTVKDNGSCIKSDVQMANSNHMQPFHAAYPEESVNRNTSLLASDGFFNGIASDLSGNEQKSNAGFLQNDSRMFSSNNAGMGEVYNGVNDYDQARNIKMVVNGDTGINRGTQLVQNELPNINTKVQLRNRKIQSEGFVAHRRSCSNEAAQVGSKSTFAGESEASENHGADGSTIVTDDADELEMPSPVSFTVGHFFSRVQVDLEDSLGSEHSLESEHSLELEHSLESGHSLESGHSLESGHSLESGHSLESEHSLESEHSLELGHSLESGHSLESGHSLESEHSLESEHSLESAHSLESGHSLESGHSLESEHSLESKDHTLKIKYSYSSKASSNPNMWSSVITLSAVVLVLLVFLANIWGYLQF 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0383 708 MobiDBLite consensus disorder prediction 550 659 - -
Lal22g0383 708 MobiDBLite consensus disorder prediction 618 638 - -
Lal22g0383 708 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 15 459 - -
Lal22g0383 708 ProSiteProfiles NAC domain profile. 20 170 IPR003441 GO:0003677|GO:0006355
Lal22g0383 708 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 15 459 - -
Lal22g0383 708 MobiDBLite consensus disorder prediction 573 587 - -
Lal22g0383 708 MobiDBLite consensus disorder prediction 550 572 - -
Lal22g0383 708 Pfam No apical meristem (NAM) protein 21 146 IPR003441 GO:0003677|GO:0006355
Lal22g0383 708 SUPERFAMILY NAC domain 15 170 IPR036093 GO:0003677|GO:0006355
Lal22g0383 708 MobiDBLite consensus disorder prediction 491 514 - -
Lal22g0383 708 MobiDBLite consensus disorder prediction 588 608 - -
Lal22g0383 708 MobiDBLite consensus disorder prediction 187 210 - -
Lal22g0383 708 MobiDBLite consensus disorder prediction 491 517 - -
Lal22g0383 708 Gene3D NAC domain 29 174 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0383 Lal-Chr22 2435983 2439794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0383 14 327 NAC Transcription Factor Family AT3G49530 50.456 5.03e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal22g0383 NAM 6.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0383 - - lang:109356058 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0383 22 2435983 2439794 Lal6g0407 6 2552927 2556731 LSH
Lal22g0383 22 2435983 2439794 Lal21g0603 21 4537727 4544491 PCT
Lal21g0603 21 4537727 4544491 Lal22g0383 22 2435983 2439794 PCT