Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0377 ATGATGATTCTTAAAAGGGACAAGTACAAAGAACAATCTATATTAGTAACTTGGTATACCAAAAAGACTCTTATTTTGATCAAAATGGGCCTTCCAAATATTCTATCTCCATCTGAAGGAATATTATGTTGTTTTTTGAGAAAAGGTGTGTTTGCAATATCCATAGTTAAAGGCATTGTTATGATAATCCTACACATTCTTGGTATCAATCTTTCATCTTCAAATAACTCCCAATACCCACCTGAATTATTTGAATTTCCTGAGTCATTTGAACTCCTTGATAGTCCCTCTGGTAGTACTTACATTGAAGAGATTAAAAGCCAGACACCAACTCTTAGATTTGACAGTTTGTGTTGCTATAAACAAACTGAAGTTGAATGCATTGTATGTCTTACTCAGTTTGAACCAGAATCAGAGATAAACCATTTATCTTGTGGCCATATCTTCCATAAAGTATGCTTGGAAAAGTGGTTGAACTATTTGAATATTACATGTCCACTTTGTAGGGCACCCTTAATGCTTGGAGTTAAAGATGAGACACCTTACTTTTAG 552 0.3388 MMILKRDKYKEQSILVTWYTKKTLILIKMGLPNILSPSEGILCCFLRKGVFAISIVKGIVMIILHILGINLSSSNNSQYPPELFEFPESFELLDSPSGSTYIEEIKSQTPTLRFDSLCCYKQTEVECIVCLTQFEPESEINHLSCGHIFHKVCLEKWLNYLNITCPLCRAPLMLGVKDETPYF 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0377 183 SMART ring_2 127 168 IPR001841 -
Lal22g0377 183 SMART FANCL_C_2 123 174 - -
Lal22g0377 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 173 IPR013083 -
Lal22g0377 183 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Lal22g0377 183 Pfam Ring finger domain 126 169 IPR001841 -
Lal22g0377 183 PANTHER - 29 178 IPR044249 -
Lal22g0377 183 SUPERFAMILY RING/U-box 122 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0377 Lal-Chr22 2406784 2409287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0377 29 179 C3H Transcription Factor Family AT2G04240 48.193 1.83e-40 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0377 K16285 - gmx:100786803 183.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0377 22 2406784 2409287 Lal6g0401 6 2519206 2519682 LSH