Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0370 ATGAAGTGGGAAATGGAAATCCTTCCTCCTTCACCTTACACTTCAAACTCCAATAGTTATGTGGAAGATAAGAACAAAACAAAATGGAGCCATGAAGAGAACAAGCTATTTGAGAATGCTCTTGCAGTGTATGATAAGGATACATCAGATAGGTGGCACAAAGTGGCAGAAATGATACCAGGAAAGACAGTTGAAGATGTTATGAGACAGTACAAGGAATTGGAAGCAGATGTTTGTGACATAGAGGCTGGTTTGGTCCCAGTTCCTGGCTATGATAGTGCTACTATTACCCCACCTTTCACCTTAGACTACATGGTCAACACTTCTGGCTATGATGGGTTTAAAGGAGGAATCAGTGGAAAGAGATCATCAGTTAGAGCTCCTGACCAAGAAAGGAAAAAAGGAGTGCCATGGACTGAAGAGGAACACAAATTATTTCTACTGGGATTGAATAAGTATGGAAAAGGTGATTGGAGAAACATATCCAGAAATTTTGTTATTACAAGAACACCAACTCAGGTGGCTAGCCATGCTCAAAAGTACTTTATTAGACAACTTTCAGGAGGCAAAGACAAGAGAAGAGCTAGCATTCATGACATAACAACAGTTAATCTCACAGAAGCTACTGGAACTTCTTCAGATGACACCAAAAATTCCACTTCACCACAACATTCCATGATGTTCTCACAGCAGTCAAATACTAATGCTACTTCACCTAGTGCTCATTTTCAGTGGAATGTTCAGCCAAATGCAGGAGTAGATATGCCTATGAATCAAGCACATGATCAACTTTTCATGTCTCCATATGATGTTAGCTCCTATGGGCTTAACATGCAAGGCCAAAATCTGCATCATCATGAGTCTTCTTATTTAGAACCTCAGACAGAGAACATGGTTTTCCAAATGCAACAGTCCTCAGAACATTTTCCTCATTCATAA 939 0.3983 MKWEMEILPPSPYTSNSNSYVEDKNKTKWSHEENKLFENALAVYDKDTSDRWHKVAEMIPGKTVEDVMRQYKELEADVCDIEAGLVPVPGYDSATITPPFTLDYMVNTSGYDGFKGGISGKRSSVRAPDQERKKGVPWTEEEHKLFLLGLNKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTEATGTSSDDTKNSTSPQHSMMFSQQSNTNATSPSAHFQWNVQPNAGVDMPMNQAHDQLFMSPYDVSSYGLNMQGQNLHHHESSYLEPQTENMVFQMQQSSEHFPHS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0370 312 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Lal22g0370 312 CDD SANT 137 182 IPR001005 -
Lal22g0370 312 ProSiteProfiles Myb-like domain profile. 130 182 IPR001005 -
Lal22g0370 312 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 287 IPR043363 -
Lal22g0370 312 CDD SANT 28 74 IPR001005 -
Lal22g0370 312 ProSiteProfiles SANT domain profile. 138 186 IPR017884 -
Lal22g0370 312 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 287 - -
Lal22g0370 312 SUPERFAMILY Homeodomain-like 26 80 IPR009057 -
Lal22g0370 312 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 133 185 IPR006447 GO:0003677
Lal22g0370 312 Gene3D - 136 186 - -
Lal22g0370 312 Pfam Myb-like DNA-binding domain 26 72 IPR001005 -
Lal22g0370 312 Pfam Myb-like DNA-binding domain 137 182 IPR001005 -
Lal22g0370 312 Gene3D - 21 88 - -
Lal22g0370 312 MobiDBLite consensus disorder prediction 208 239 - -
Lal22g0370 312 SMART sant 25 77 IPR001005 -
Lal22g0370 312 SMART sant 134 184 IPR001005 -
Lal22g0370 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 186 IPR017930 -
Lal22g0370 312 ProSiteProfiles SANT domain profile. 24 74 IPR017884 -
Lal22g0370 312 SUPERFAMILY Homeodomain-like 132 185 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0370 Lal-Chr22 2383737 2386250 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal22g0370 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0370 - - gmx:778181 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0370 22 2383737 2386250 Lal22g0370 22 2383737 2386250 ECH
Lal22g0370 22 2383737 2386250 Lal22g0242 22 1511667 1513969 ECH
Lal22g0370 22 2383737 2386250 Lal3g0575 3 4350942 4353198 ECH
Lal1g2221 1 24169617 24171443 Lal22g0370 22 2383737 2386250 ECH
Lal2g1901 2 21263653 21266258 Lal22g0370 22 2383737 2386250 ECH
Lal22g0370 22 2383737 2386250 Lal6g0393 6 2476298 2479256 LSH