Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal22g0368 | ATGAGTCCGTCGTCGCCACCAGATCCGTCATCGCCAGCATCACCGTCGGTAGGTTTCAACACCGACCAGCTTCCACACACTCACACTAGTCACGCCTCTGAAGACGATGAAGCATCCGTTGATCCCAATGTTATTCCAGACGATCCTGAACATGTCCCCGACGAAGACGAAGATGACGACGGGGAAGATCTTTTCAATGATAATTTCTTAGAGTATTCCCCCCCCTCTCTCTCTCTCGATATTCTAGTTCATTTCTATTTTATTTTCAGCGAGCAAAATAAAACCCTTATTCATTTATTTAACAGTGATTATCAGAAGATGGAAGAGCATGATCAGTTTGAACCACTCGGACTCGATGATTCGTTGGAGGACGATAGGGATGTTGATCAGGTCATGCAAGATCGTAGGGCTGCTGAGGTTGAACTTGATGCTCGTGATGGTCGTGTTTCTACTCACAACAAACTTCCTCAACTTCTCCATGACCAAGATGATGATGATGATGACAGTTACAGGCCTTCAAAAAGGGCTCGAGCTGATCGACCTCCTCATATGCCAAGTGATGACGACCTTGATGGGATGCAGAGTTCACCTGGAAGGTCACAACGGGGACACTCAAGAGAGGATGTTCCCATGACTGATCAAACTGATGATGATCAATATGAGGATGAATATGATGATGAAGGTGAGTATGCCATGTATCGTGTTCAAGGAACACTTAGGGAGTGGGTTACCAGAGATGAAGTGCGCCGTTTCATAGCTAGGAAGTTCAAGGACTTCTTATTGACATATGTTAATCAGAAAAATGAACATGGTGAATTTGAATATGTGCGGCTGATAAATGAGATGGTGTCGGTTAATAAGTGCAGCTTGGAGATAGATTACAAACAATTTATCTATGTCCACCCCAACATTGCTATTTGGCTGGCTGATGCGCCTCAGTCTGTTTTAGAAGTAATGGAAGATGTTGCTAAAAATGTTGTATTTCAATTACATCCAAACTACAAAAATATTCATCAAATAATTTATGTCCGCATCACCAACTTACCAGTTTATGATCAGATTCGAAATATAAGGCAGATCCACTTGAATACCATGGTCCGAATTGGGGGAGTTGTAACCAGGCGCTCTGGAGTTTTCCCACAGTTGCAGCAGGTGAAGTATGACTGTAATAAATGTGGGGCAGTTTTGGGGCCTTTTTTCCAGAATTCATATTCAGAGGTGAAAGTTGGATCCTGTCCTGAGTGTCAATCAAAAGGACCATTTACTGTCAACATTGAGCAGACAATTTATAGGAATTTTCAAAAGCTCACACTCCAAGAGAGCCCAGGAATAGTTCCTGCAGGTCGATTACCAAGATATAAGGAAGTTATACTATTGAATGATCTGATTGACTGTGCTCGCCCTGGAGAAGAGATTGAGGTAACAGGGATTTATACTAACAACTTTGACTTATCCCTGAACACGAAGAATGGGTTTCCAGTGTTTGCCACTGTTGTTGAGGCAAATTATGTTACAAAGAAACATGACCTGTTTTCTACCTACAAACTTACACAAGATGACAAAGAAGAAATTTATAATTTGGCAAGAGACCCCAGAATAGGAGAAAGGATTATCAAGTCTATTGCTCCATCAATCTATGGTCATGATGACATAAAAACTGCAATAGCTCTAGCTATGTTTGGAGGTCAAGAAAAAAATGTTAAAGGAAAGCATCGGTTGCGAGGAGACATCAATGTTCTTCTCCTTGGTGATCCAGGAACCGCAAAATCACAATTTCTCAAATATGTCGAAAAAACTGGGTTGAGAGCTGTATACACCACTGGCAAAGGGGCTTCTGCCGTGGGTCTCACAGCAGCAGTTCACAAGGATCCAGTCACAAGGGAGTGGACACTTGAAGGGGGAGCCCTTGTTCTAGCTGACAAAGGAATTTGTCTTATTGATGAGTTCGACAAGATGAATGACCAGGATAGGGTAAGTATCCATGAAGCCATGGAGCAGCAGAGTATAAGCATATCAAAAGCAGGAATTGTGACTTCTCTCCAGGCACGATGTTCTGTTATTGCTGCTGCAAATCCTATTGGCGGAAGATATGATTCCTCAAAAACATTTTCTCAAAATGTTGAATTGACGGATCCTATTATTTCTCGTTTTGACATCCTCTGTGTTGTGAAGGATGTGGTTGATCCGGTCACTGATGAAATGCTCGCACAGTTTGTAGTTGACAGTCACTTCAAATCACAGCCCAAAGGTGGTAACAAAGATGATAATAAGTCCTTGAGTGAGCCCCAAGATGCCTCCATGCCAGATGATCCTGAGATACTTCCTCAAGGGCTGCTGAAGAAGTACCTTACATATGCCAAGACGAATGTGTTTCCAAGGTTGCATGATGCTGACTTGGATAAACTGACTCATGTTTATGCTGAACTGCGGAGGGAATCTTCACATGGACAAGGAGTCCCCATTGCTGTAAGGCACATTGAGTCAATGATAAGGATGTCTGAAGCTCATGCGAGAATGCATCTTAGACAACATGTCATACAAGATGATGTGGACATGGCAATTCGTGTTCTACTTGATTCATTCATTTCAACCCAAAAATTTGGGGTACAGAAAGCTCTGCAAAAGAGTTTCAGGAAGTATATGACTTTCAAGAAGGACTACAATGACTTGCTGCTTTACCTTCTACGGGGGCTTGTTAATAATGTTTTGCATTTTGAAGAAATTGTTAGAGGATCTGCTTCAGGTCTTACTCGGGTCGATGTCAAAGTTGAAGATCTCTCCCGCAAGGCTCAAGAGCATGAAGTTTATGATCTTAAACCCTTCTTCAGCAGCGGTCAATTTTTAAACGCCAATTTTGTGTTGGATGAAGATAGAGGAGTGATCATACATCATCTCTTCTAG | 2901 | 0.4219 | MSPSSPPDPSSPASPSVGFNTDQLPHTHTSHASEDDEASVDPNVIPDDPEHVPDEDEDDDGEDLFNDNFLEYSPPSLSLDILVHFYFIFSEQNKTLIHLFNSDYQKMEEHDQFEPLGLDDSLEDDRDVDQVMQDRRAAEVELDARDGRVSTHNKLPQLLHDQDDDDDDSYRPSKRARADRPPHMPSDDDLDGMQSSPGRSQRGHSREDVPMTDQTDDDQYEDEYDDEGEYAMYRVQGTLREWVTRDEVRRFIARKFKDFLLTYVNQKNEHGEFEYVRLINEMVSVNKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVAKNVVFQLHPNYKNIHQIIYVRITNLPVYDQIRNIRQIHLNTMVRIGGVVTRRSGVFPQLQQVKYDCNKCGAVLGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKHDLFSTYKLTQDDKEEIYNLARDPRIGERIIKSIAPSIYGHDDIKTAIALAMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGLRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDPVTDEMLAQFVVDSHFKSQPKGGNKDDNKSLSEPQDASMPDDPEILPQGLLKKYLTYAKTNVFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVIQDDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNDLLLYLLRGLVNNVLHFEEIVRGSASGLTRVDVKVEDLSRKAQEHEVYDLKPFFSSGQFLNANFVLDEDRGVIIHHLF | 966 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal22g0368 | 966 | Pfam | MCM P-loop domain | 521 | 743 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lal22g0368 | 966 | Gene3D | - | 381 | 431 | - | - | |
| Lal22g0368 | 966 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 543 | 864 | IPR027417 | - | |
| Lal22g0368 | 966 | ProSitePatterns | MCM family signature. | 642 | 650 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Lal22g0368 | 966 | Gene3D | - | 513 | 884 | IPR027417 | - | |
| Lal22g0368 | 966 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
| Lal22g0368 | 966 | ProSiteProfiles | MCM family domain profile. | 533 | 739 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lal22g0368 | 966 | Pfam | MCM AAA-lid domain | 778 | 861 | IPR041562 | - | |
| Lal22g0368 | 966 | SMART | mcm | 350 | 862 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lal22g0368 | 966 | Pfam | MCM OB domain | 353 | 480 | IPR033762 | - | |
| Lal22g0368 | 966 | MobiDBLite | consensus disorder prediction | 50 | 66 | - | - | |
| Lal22g0368 | 966 | MobiDBLite | consensus disorder prediction | 157 | 187 | - | - | |
| Lal22g0368 | 966 | MobiDBLite | consensus disorder prediction | 139 | 227 | - | - | |
| Lal22g0368 | 966 | CDD | MCM2 | 536 | 860 | - | - | |
| Lal22g0368 | 966 | SUPERFAMILY | Nucleic acid-binding proteins | 255 | 502 | IPR012340 | - | |
| Lal22g0368 | 966 | Pfam | Mini-chromosome maintenance protein 2 | 98 | 225 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Lal22g0368 | 966 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 574 | 589 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lal22g0368 | 966 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 634 | 648 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lal22g0368 | 966 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 662 | 675 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lal22g0368 | 966 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 686 | 698 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lal22g0368 | 966 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 713 | 721 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lal22g0368 | 966 | Pfam | MCM N-terminal domain | 254 | 347 | IPR027925 | - | |
| Lal22g0368 | 966 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 363 | 380 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Lal22g0368 | 966 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 386 | 398 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Lal22g0368 | 966 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 421 | 435 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Lal22g0368 | 966 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 482 | 493 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Lal22g0368 | 966 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 497 | 508 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Lal22g0368 | 966 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 170 | 961 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lal22g0368 | 966 | MobiDBLite | consensus disorder prediction | 745 | 773 | - | - | |
| Lal22g0368 | 966 | Gene3D | - | 354 | 479 | IPR012340 | - | |
| Lal22g0368 | 966 | Gene3D | - | 246 | 350 | - | - | |
| Lal22g0368 | 966 | PANTHER | DNA HELICASE | 170 | 961 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal22g0368 | Lal-Chr22 | 2369978 | 2375121 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal22g0368 | 18 | 961 | Core DNA Replication Machinery Family | AT1G44900 | 73.073 | 0.0 | 1343 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal22g0368 | K02540 | - | gmx:100799441 | 1519.21 |