Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0353 ATGTCTCACAATTCTATTATGGCGGTTGATGATGTGAATTTTGATGGGACCAGAAAGCGTAAAAGAGGAATGTATAGGAAAAAGAAGCTTCTTGTTAATGACAAAGTTGAGGTTAGGAGTATGGAAGAGGGGTTTCTAGGTTCATGGAACTCAGGGACAGTTATCCATTGTGGGAGGCAAAAGCGCCATATAAAATATGACAATATTTTAGAAGATGATAGATCAGATTATGTTGTGGAAGTTGTAAAAATTTCTGCTGTTTTGGATGGCGAAAGTGTTAGCTCCTCAGATCAGAATGAACGTGGCATCATCAGACCAATCCCTCCAATGGTTGACATTAGGGAATGTGACCTTTCATTTGGTGTCTGTGTTGACGCGAATTATGAGGAAGCTTGGTGGGAAGGAGTTATATTCGACTGCCATGATGGAATGGAGGAGAGGAGCATATTCTTCCCTGATCTGGGCGATGAAATGAAGATGAAAATTCAGCAATTGCGGATCACTCGGGACTGGGATGAAGTTTCTGAGGGTTGGAAGCAAAGAGGAAAATGGGTATTCTTTGAGTTGATTGAAGAGATTGCGAAGGAATCCTATATTCCTATCTCAATCAAGCAAATTTATTATGACTTAAGGGAAAGAAATGATTTTAACAGAATCCATGACTGGACCTGCAATGTCAAGGACTTGTGGAAAGAGCCAGTAATGGAGATCATTAAAGAATACACTGATCTAACAGTATCAGAAATTTTGCACATCTTAAAGCTTCCAGGAAATCTCTCACAAGAAATACCAGAGCAACCCACAGCTAATGTTGATTCAAATGTGGAAGTTGTTGAACCACACAATGCTATTGTGGCCAATTCAAAAATGACCTTCCCTGAGAAGGAAACTTTTGTTCCGGAAGAACTTGCATCTCCAGTTCAGGTGGTCATGCCTGAATGTCAAAAGGAAATATCAGGTACACTCTGCTATGAAAAGAATAAAGAATGTAGTCGCTTTCGTTCAAGGAACATATGTTGGCAACCTGTGGAAATGCTTGATGTTCATTACTGCCCCGATGTTATTGAACAATATCTACTTGGCTGCGAAAGCAAGACCATCAGGGAGTTTTTGAAGGATAATGTAAGAAAGCATCTTGCCTATCTTGGGTGGACAATTGAGTTCACTGAAGATAAAACATTAGGGCGATTGCGGCGATACAGGTACAAGTCACCTGCTGCTGATACACAGGACCAAGTTGTTTTCAATTCATTGCTCAAAACATGCAACTATTTGCAAAAGGAGTCCAGCACACACTGTCTGCAGACTAGGATGCTTACTGACCGGCCCCACGAGGGCCAGGGTCAAGATGTTTGTCCTGTAATGCTTGCAACATCACTATCTGTTAAAGATATTGTTGAACCTGAACATTGTCCTGAAGCTGTTGTGAAATATTATTCTTATGCAATAGAGAACCGCTTGGATGATAGAAAAAAATGGAGACTAAAAGCTACGAAGCATCTGTTAGCAGAAGGATGGATCCTTGAGTACCCAAATAGAAACAGGAGGAGAGCATTGTACAAGTCTCCACAAAATCAACATGTGGAAACACTCCAGGAAGCATGCAAAATTTACCTCAGTGCAAACATTCCCAAGTGGATTGTTGCTGGAATGAGAACTGTGAATGTCTCAGCCATTACCAAGGAAGATGATGATATATTGGAGTGCGTGACCCAATTGTTTCGGAAGGAAACAGAATTCAATACTACAGATGCATTGACCGAAAGAAAATCAGCTGATAATACAAGGCATAAACACTTGAAGACTTCAAAGGCCACCCCTCCAAAGGGTCAGCACAATAGACCCCTTACACGTGTGCTACAACCACGCAAAAGGGCGCAGGTGGTGCTTGCCCCTAGTAACTCCCTTCCAATACCCCGAAATGTCATATCTTGGTTATTAGATAAAAACATGGTTTTGTCAAGATCCAAGGTCTATTACCGGGAAGAAAGAGGCAGGGATCCTCCTTTGGCTGAAGGGAGGATAACTCGTGATGGAATCAAGTGCAGCTGTTGTCACAATATATATGGACTTAATGGCTTTGCTACCCATGCTACTGGAAGTATTAACTGCAGCCCTTCTGATAATATCTTTTTGAAGGATGAAAGGTCACTCTTAGATTGCCAGAAAGAAGTCATGTATGCTGACATGGCAAGTGAAACAATAGGAAAACCAAGCACTGATTTGTGTGAAGATGAAAATGAAAATAGTTGTTCTGTTTGCCAATCTGGTGGTGATCTAATTTTATGTGACCAATGCCCGTCTGCATTCCATAAGGAGTGTCTTGGTTTGAAGGACATCCCTGATGGTGACTGGTTTTGTCCATCATGTCATTGCCCGATTTGCCACAAAATCACAACGGAAAAAACTGAGGAAGGACGTTTTCTTACTTGCTCTCAGTGTGAATATAAATATCATCTTGAATGTCTGAGAAATAGGACAGATCAATCCAGAGGATATCTGCCTTTAGAACAATGTCTGTGTGGAAAAGAGTGTGAACAGATATACACAGGCCTTAATAAACTATTAGGAAAGCCAGTTTTAGTGGGAGGGGACAATCTAACTTGGACATTGCTGAAGTATGCCAAGTCCGAGAGTAGTGATGTTCATAATACTACAAATCACTTCTTGGCAGAGTGTTACAGCAAACTTAGTGTTGCAGTTTCAGTGATGCATGAATGTTTTGAGCCCGTAAATAGCCCTTCATCTACCAGAGATCTCGCTGAAGATGTTATATTTAGCAGATGGTCCAAGTTTCCAAGATCAAACTACAATGGTTTCTATACCATACTTTTGGAGAGAAATGAAGAATTGATTAGTGTGGCAAATATTAGGGTATATGGAGAGAAGGTGGCAGAAATACCTCTTGTAGGTACAAGATTTGAGTATCGGGGACTTGGAATGTGTCGCATTTTGATGAACGAACTTGAAAAGATGCTCATGAATCTGGGAGTGAAGAGGCTAGTTTTGCCTGCTGTTCCTGATACACTAGAAACATGGACCAAGTCCTTTGGTTTTGTGAAAATGACAAGTTCTGAGAGAACACAGTTTTTGGACCATGTTTTCCTAGATTTTCCAGAAACCATCATGTGCCAAAAGTTTTTAACAAGGAGTCCATCACCAGATTCAGATTTAACAACTGAGAACCAGCCAAAAGCACCTGGTATTTTATCTGTTAAATGTAAAATTGAGTTTGATAAGTCAAGTTCAGCATCAGAGGAAGACCAAGCAGAAGATATTGATAAAACAAAACAGATAATGTGCATAGAATAA 3312 0.4052 MSHNSIMAVDDVNFDGTRKRKRGMYRKKKLLVNDKVEVRSMEEGFLGSWNSGTVIHCGRQKRHIKYDNILEDDRSDYVVEVVKISAVLDGESVSSSDQNERGIIRPIPPMVDIRECDLSFGVCVDANYEEAWWEGVIFDCHDGMEERSIFFPDLGDEMKMKIQQLRITRDWDEVSEGWKQRGKWVFFELIEEIAKESYIPISIKQIYYDLRERNDFNRIHDWTCNVKDLWKEPVMEIIKEYTDLTVSEILHILKLPGNLSQEIPEQPTANVDSNVEVVEPHNAIVANSKMTFPEKETFVPEELASPVQVVMPECQKEISGTLCYEKNKECSRFRSRNICWQPVEMLDVHYCPDVIEQYLLGCESKTIREFLKDNVRKHLAYLGWTIEFTEDKTLGRLRRYRYKSPAADTQDQVVFNSLLKTCNYLQKESSTHCLQTRMLTDRPHEGQGQDVCPVMLATSLSVKDIVEPEHCPEAVVKYYSYAIENRLDDRKKWRLKATKHLLAEGWILEYPNRNRRRALYKSPQNQHVETLQEACKIYLSANIPKWIVAGMRTVNVSAITKEDDDILECVTQLFRKETEFNTTDALTERKSADNTRHKHLKTSKATPPKGQHNRPLTRVLQPRKRAQVVLAPSNSLPIPRNVISWLLDKNMVLSRSKVYYREERGRDPPLAEGRITRDGIKCSCCHNIYGLNGFATHATGSINCSPSDNIFLKDERSLLDCQKEVMYADMASETIGKPSTDLCEDENENSCSVCQSGGDLILCDQCPSAFHKECLGLKDIPDGDWFCPSCHCPICHKITTEKTEEGRFLTCSQCEYKYHLECLRNRTDQSRGYLPLEQCLCGKECEQIYTGLNKLLGKPVLVGGDNLTWTLLKYAKSESSDVHNTTNHFLAECYSKLSVAVSVMHECFEPVNSPSSTRDLAEDVIFSRWSKFPRSNYNGFYTILLERNEELISVANIRVYGEKVAEIPLVGTRFEYRGLGMCRILMNELEKMLMNLGVKRLVLPAVPDTLETWTKSFGFVKMTSSERTQFLDHVFLDFPETIMCQKFLTRSPSPDSDLTTENQPKAPGILSVKCKIEFDKSSSASEEDQAEDIDKTKQIMCIE 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0353 1103 MobiDBLite consensus disorder prediction 585 600 - -
Lal22g0353 1103 Pfam Agenet domain 33 109 IPR008395 -
Lal22g0353 1103 MobiDBLite consensus disorder prediction 1080 1103 - -
Lal22g0353 1103 CDD NAT_SF 943 1003 - -
Lal22g0353 1103 ProSiteProfiles Zinc finger PHD-type profile. 748 793 IPR019787 -
Lal22g0353 1103 PANTHER PHD ZINC FINGER PROTEIN 11 1096 - -
Lal22g0353 1103 CDD PHD2_CHD_II 750 790 - -
Lal22g0353 1103 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 885 1041 IPR000182 GO:0016407
Lal22g0353 1103 SMART ring_2 751 790 IPR001841 -
Lal22g0353 1103 SMART ring_2 792 841 IPR001841 -
Lal22g0353 1103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 739 805 IPR013083 -
Lal22g0353 1103 Pfam Acetyltransferase (GNAT) family 922 1019 IPR000182 GO:0016407
Lal22g0353 1103 Pfam Tify domain binding domain 673 724 IPR032308 -
Lal22g0353 1103 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 11 1096 - -
Lal22g0353 1103 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 921 1032 IPR016181 -
Lal22g0353 1103 SMART agenet_At_2 116 173 IPR014002 -
Lal22g0353 1103 SMART agenet_At_2 28 112 IPR014002 -
Lal22g0353 1103 SMART PHD_3 750 791 IPR001965 -
Lal22g0353 1103 SMART PHD_3 792 845 IPR001965 -
Lal22g0353 1103 MobiDBLite consensus disorder prediction 585 615 - -
Lal22g0353 1103 Gene3D - 902 1034 - -
Lal22g0353 1103 Pfam PHD-finger 751 792 IPR019787 -
Lal22g0353 1103 SUPERFAMILY FYVE/PHD zinc finger 737 790 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0353 Lal-Chr22 2270097 2276185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0353 30 993 PHD Transcription Factor Family AT5G58610 36.768 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal22g0353 Acetyltransf_1 1.4e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0353 - - gmx:102661511 1152.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0353 22 2270097 2276185 Lal22g0353 22 2270097 2276185 ECH
Lal3g0695 3 5584807 5594146 Lal22g0353 22 2270097 2276185 PCT
Lal22g0353 22 2270097 2276185 Lal3g0695 3 5584807 5594146 PCT