Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0352 ATGTGTGGTATACTTGCTCTGCTTGGTTGTCCTGATACCTCTCAAGCTACAAGGCACCGTGGTCCAGATTGGAGTGGGCTTCATCAACATGGTGACTGCTATTTGGCTCATCAACGATTGGCAATAGTTGATCCTGCTTCTGGTGATCAACCTCTCTTTAATGAAGACAAATCTATTGTTGTCACTGTAAATGGAGAGATTTACAACCATGAAGAGCTCAGAAAACAACTTCCTAATCACAAATTCAGAACCGGAAGTGACTGTGATGTTATTGCTCACCTGTATGAAGAACATGGAGAGAACTTTGTGGATATGCTGGATGGTATCTTTTCATTTGTTCTACTGGATACTCGTGACAACAGTTACATAGTGGCTCGTGATGCGATAGGGGTCACTTCTCTGTACATTGGTTGGGGCTTGGATGGTTCTGTGTGGATTTCATCAGAAATGAAAGGGTTGAATGATGATTGTGAACATTTTGAAGTTTTTCCACCTGGTCACTTGTACTCTAGCAGAGACAGCGGGTTCCGCAGATGGTATAACCCTCCTTGGTTCTCTCAGGCTATTCCATCAGCCCCTTATGATCCTCTAGCTTTGAGGCATGCCTTTGAGAAGGCTGTGATTAAAAGGTTGATGACTGATGTTCCCTTTGGTGTCCTACTATCTGGAGGTTTGGACTCTTCCTTGGTTGCATCCATCACTGCTCGCTACCTAGGAACCACAAAGGCTGCTGAGCAATGGGGATCAAAGTTACATTCATTCTGCGTAGGCCTTGAGGGTTCACCAGATCTGAAGGCTGCTCAAGAGGTTGCAGACTATCTAGGAACTGTCCACCATGAGTTTCAATACACTGTTCAGGATGGCTTAGATGCCATTGGGGATGTTATCTACCATGTTGAAACATATGATGTGACTACAATTAGAGCAAGCACACCCATGTTTCTAATGTCTCGGAAGATAAAGTCCCTCGGTGTCAAATGGGTAATCTCTGGTGAAGGATCTGATGAAATCTTTGGAGGGTATTTGTACTTCCACAAGGCACCTAACAAGGAAGAGTTTCACCAAGAAACATGCCGCAAGATTAAAGCACTCCACCAATATGATTGTCAGCGAGCCAATAAGTCAACATTTGCTTGGGGTCTGGAAGCCCGAGTTCCATTTTTGGACAAGGAGTTTATCAATGTGGCAATGAATATTGACCCTGAGCATAAAATGATAAAACGAGATGAAGGGCGGATTGAGAAATGGGTTTTGAGGAGGGCTTTTGATGATGAAGAGCATCCTTATCTGCCAAAGCACATTTTATACAGGCAGAAGGAACAATTCAGTGATGGAGTTGGCTATGGTTGGATAGATGGCCTTAAAGCCCATGCTGCAAAACATGTGACTGATAAAATGATGCTTAATGCTGGTAATATCTTCCCACATAACACCCCAAATACCAAAGAAGCGTATTACTACAGAATGATCTTTGAGAGGTTCTTCCCCCAAAACTCAGCAAGGCTCACTGTTCCTGGAGGACCGAGTGTCGCTTGTAGCACGGCGAAAGCTATTGAGTGGGATGCTGGCTGGTCCAAAAACCTTGACCCTTCAGGTAGAGCAGCACTAGGAGTGCACATTTCAGATTATGACAATCAGAATAACCCAGTCAACAACACTGTAGAACTTGAGAAGATTATACCTACTGAAGCTCCTCTTGGAGTTGCCATTCAGGGCTAG 1719 0.4415 MCGILALLGCPDTSQATRHRGPDWSGLHQHGDCYLAHQRLAIVDPASGDQPLFNEDKSIVVTVNGEIYNHEELRKQLPNHKFRTGSDCDVIAHLYEEHGENFVDMLDGIFSFVLLDTRDNSYIVARDAIGVTSLYIGWGLDGSVWISSEMKGLNDDCEHFEVFPPGHLYSSRDSGFRRWYNPPWFSQAIPSAPYDPLALRHAFEKAVIKRLMTDVPFGVLLSGGLDSSLVASITARYLGTTKAAEQWGSKLHSFCVGLEGSPDLKAAQEVADYLGTVHHEFQYTVQDGLDAIGDVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKWVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHQYDCQRANKSTFAWGLEARVPFLDKEFINVAMNIDPEHKMIKRDEGRIEKWVLRRAFDDEEHPYLPKHILYRQKEQFSDGVGYGWIDGLKAHAAKHVTDKMMLNAGNIFPHNTPNTKEAYYYRMIFERFFPQNSARLTVPGGPSVACSTAKAIEWDAGWSKNLDPSGRAALGVHISDYDNQNNPVNNTVELEKIIPTEAPLGVAIQG 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0352 572 CDD Asn_Synthase_B_C 200 445 IPR001962 GO:0004066|GO:0006529
Lal22g0352 572 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 184 IPR029055 -
Lal22g0352 572 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 187 470 - -
Lal22g0352 572 Pfam Asparagine synthase 199 349 IPR001962 GO:0004066|GO:0006529
Lal22g0352 572 PANTHER ASPARAGINE SYNTHETASE 1 571 - -
Lal22g0352 572 Gene3D HUPs 184 502 IPR014729 -
Lal22g0352 572 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 10 181 IPR029055 -
Lal22g0352 572 Pfam Glutamine amidotransferase domain 37 154 IPR017932 -
Lal22g0352 572 TIGRFAM asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 15 357 IPR006426 GO:0004066|GO:0006529
Lal22g0352 572 CDD AsnB 2 181 IPR033738 -
Lal22g0352 572 PIRSF Asn_synthetase_glu-h 1 350 IPR006426 GO:0004066|GO:0006529
Lal22g0352 572 PIRSF Asn_synthetase_glu-h 346 505 IPR006426 GO:0004066|GO:0006529
Lal22g0352 572 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 174 IPR017932 -
Lal22g0352 572 PANTHER ASPARAGINE SYNTHETASE [GLUTAMINE-HYDROLYZING] 1 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0352 Lal-Chr22 2265189 2269707 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0352 K01953 - gmx:547894 1078.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0352 22 2265189 2269707 Lal22g0352 22 2265189 2269707 ECH
Lal22g0352 22 2265189 2269707 Lal6g0377 6 2418827 2425151 LSH
Lal3g0693 3 5570397 5576066 Lal22g0352 22 2265189 2269707 PCT
Lal22g0352 22 2265189 2269707 Lal3g0693 3 5570397 5576066 PCT