Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0351 ATGTCGTGCTCCGTCGCCGTTTCTAACTCGCCGGTGTTCTCAACCTCTTCTTCTATTTTCTCTACCAAACCTTCTATCATTTCTTCTTCTCCGGATTCTCATACACTTTCTCTTTCTCATCTCAAACCCTCTTACTCTTCTTCTGTGACCACGTTCTCTTCCTCTTCTCCTTCTAATTCTACTTCTTCTCCGTTTTCCCCTTTACGGGTTCGACTTTCTAAGCCCATTATTGCTTCACCTACCTCCTCAAACGGCCCCGTTTTGAAGAGGAAGAGGCCGGCCAGGCTTGATATACCAGTTTCTTCTCTCACCCTTCAGGTTCCGGCGACGTCGTCTGCGGTGGCTAGGGATGTGGTGGAGGATGAAGGAGATGGGTTTTCTGTGTACTGTAAGAGAGGAAGGAGGGAGTACATGGAGGATCGTTATTCTGCTGCTGATAATATACTCGGTGAATCAAAACTGGCTTTTTTTGGGGTATTTGATGGGCATGGAGGTGCAAAAGCCGCAGAGTTTGCTGCAAATAACTTAAAAAATAATGTCTTAGATGAAGTGATGACTACCCACAAAGAAGATATCCAGGAGGCGGTGAAGCGTGGTTACCTCAACACTGATTCCGATTTCTTAAAAGAGGACCTCAATGGTGGTTCTTGCTGTGTAACAGCACTGATTAATAACGGTAACCTTGTGGTGTCCAATGCCGGTGATTGTCGTGCTGTCATAAGCAGAAACGGTGTTGCAGAGGCCCTAACATCTGATCACCGGCCTTCAAGAGATGACGAAAGGGACAGAATTGAGACTCTGGGTGGCTATGTTGATTTATGCCGCGGTGTTTGGAGGATACAGGGATCTCTGGCTGTATCTAGGGGAATCGGAGATCGTCACCTGAAACAGTGGGTGACAGCAGAACCCGAGACCAAAGTTCTTAGAATTGAACCTGACCATGACTTATTAATCTTAGCTTCAGATGGGTTATGGGATAAGGTTAGTAATCAGGAAGCAGTAGATATTGCTCGTTCTTTTTTCGTAGGGAACAAGAAATCGCAACCATTACTGGCTTGTAAACGGCTTGTGGATTTGTCTATTTCCAGAGGCTCTATTGATGATACAAGTGTTATGTTAATCAAGTTGGAGCACTATATTTGA 1143 0.4523 MSCSVAVSNSPVFSTSSSIFSTKPSIISSSPDSHTLSLSHLKPSYSSSVTTFSSSSPSNSTSSPFSPLRVRLSKPIIASPTSSNGPVLKRKRPARLDIPVSSLTLQVPATSSAVARDVVEDEGDGFSVYCKRGRREYMEDRYSAADNILGESKLAFFGVFDGHGGAKAAEFAANNLKNNVLDEVMTTHKEDIQEAVKRGYLNTDSDFLKEDLNGGSCCVTALINNGNLVVSNAGDCRAVISRNGVAEALTSDHRPSRDDERDRIETLGGYVDLCRGVWRIQGSLAVSRGIGDRHLKQWVTAEPETKVLRIEPDHDLLILASDGLWDKVSNQEAVDIARSFFVGNKKSQPLLACKRLVDLSISRGSIDDTSVMLIKLEHYI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0351 380 ProSitePatterns PPM-type phosphatase domain signature. 156 164 IPR000222 GO:0043169
Lal22g0351 380 PANTHER PROTEIN PHOSPHATASE 2C 3 379 IPR015655 GO:0004722|GO:0006470
Lal22g0351 380 CDD PP2Cc 125 376 IPR001932 -
Lal22g0351 380 ProSiteProfiles PPM-type phosphatase domain profile. 125 376 IPR001932 -
Lal22g0351 380 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 379 - -
Lal22g0351 380 SMART PP2C_4 115 374 IPR001932 -
Lal22g0351 380 SUPERFAMILY PP2C-like 126 377 IPR036457 -
Lal22g0351 380 Pfam Protein phosphatase 2C 126 368 IPR001932 -
Lal22g0351 380 Gene3D - 125 379 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0351 Lal-Chr22 2252511 2254903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0351 1 380 PP2C-type Phosphatase Gene Family AT2G30020 61.443 2.50e-158 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0351 K17506 - gmx:100797934 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0351 22 2252511 2254903 Lal22g0351 22 2252511 2254903 ECH
Lal18g1242 18 15119142 15121475 Lal22g0351 22 2252511 2254903 ECH
Lal18g1242 18 15119142 15121475 Lal22g0351 22 2252511 2254903 LSH
Lal22g0351 22 2252511 2254903 Lal6g0376 6 2397560 2400410 LSH
Lal11g0937 11 12673434 12676066 Lal22g0351 22 2252511 2254903 PCT
Lal22g0351 22 2252511 2254903 Lal11g0937 11 12673434 12676066 PCT