Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0345 ATGAGGGGCATGAAGCTCAGTGAACGCTTTAAGAGCACACAAGTTCATGCCCTCAATTCATCAGAAACAAGTGGCAGAAGAAACAAAGCATGTGATGGTTCAAACAGTGCTAAAAAAATCAGATCCTTTTTGTCAATGTCCAAATCCAACCACAGCTCAACAACATCAGGAATTGCAAATCTTGTTGCACCTTTTCAGCTTCCTTCTATTGACACCCTTGAACCTTGCATAGAGCCTTACCATAAGCCAATCAACCTTGTGGAAACCTTAGCAGAATTATATCACAGGCAAGAGTGCTGCCACCAATCCCAGAAAGCGTTACTGTTTGTGGAACAGTACTCCTTGTTGTGCAACCTCAGAGACCAGAAGCTTCTGAGAAGATGTCTCAGGACGGCGCGCCAGAACTCAGTGGATGTGCTCTCCAAGGTTGTTCTGTCAGCATGGTTGAGGTTTGAGAGGAGGGAGGATGAGCTTGAGGGTGTTTCTTCAATGGAATGTGGTGGTGGTTGCATTCTTGAATGTCCAACTTTGAATTTGGTACATGGTTTTAATCCATGTTCAATCAAGGATAGGTGCCAGTGTGGTCAAGAGAGTAAACAAGAAACTAGCACTGACAGTGTGTGTTTGCCAGATGAGGAAAAAAAGGATGTTTGTTTTTGCATTGGAAATGAGGAAATCAATTGTGTTAGGTTGAGAATTGCAGCACTTTCAGACCCATTTAAGGCCATGCTATATGGTGGCTTTGCTGAGTCCAAAATGAGGAAGATTGATTTCACAAAAAGTGGGGTATGCTCAAAGGGTATGATGGCTGTGGAATTGTATAGCAGGGCTAAAAGATTGGACTTTTTCACTCCCATGACTGTTTTGGAGCTTCTTTCTTTTGCCAATCGATTCTGTTGTGAGGAGATGAAATCTGCCTGTGATGCCTATTTGGCTTCAATTGTTGGAAGTGTAGATGATGCTTTGATACTTTTTGACTATGGATTGGAAGAGAGAGCACCAATTCTTGTAGCTTCCTGCTTACAAGTGTTTCTTAGGGAGCTGCCAAAAACTTTGTATAATTTAAAGGTGATGAAAATCTTTTGTAGTTCTGAGGCAAAGGAAAGGTTGGCTATGGTGAGATATGATTCTTTCTTACTGTACTATTTCCTGAGCCAGGTAGCTATGGAGGAAAGCATGGTATCAATAACTACAATGATGTTATTGGAAAGATTGGGAGAGTGTGCTAAGGAAAGATGGCAGAAGGCCCTTGCATATCACCAATTAGGGTGTGTGATGCTTGAGAGGAAAGAATATAAAGATTCTCAGCGTTGTTTTGAGGTAGCAGCTGAGGCAGGTCATGTGTATTCTCTGGCTGGTGTTGCCAGAACAAAGCACAAGCAGGGTCAACAATGTTCAGCCTATAAGCTAATTAGTTCTCTCATCTTTGAGCATAAACCAACCGGATGGATGTATCAGGAGCGTGCTCTACACAATACAGGAAGGGAAACAAGTTTTGATTTGGATGTTGCCACTGAATTGGATCCTTCCCTTTCATACCCATATAAATATAGAGCCCTGGCAAAGGTGGAGGAGAAGCAGATAATGGATGGAATTGTAGAGCTTGATAAAATTATAGGATTTAAGCTCTCCCCTGATTGCCTAGAATTGAGGGCTTGGATGTTTATTGCTCTACAGAATTATGAGAGTGCCATGAGAGATATTCGCGCATTGTTAACTTTGGAACCAAATTACATAACTTCACATGGCAAGATCACGGGGAAATACTTGGTTCACCTCCTTAGCAATGAGGTTCAGCAAAAGAGCCAGGCTGAATGCTGGATGCAATTATATGAACAATGGTCTTCTGTGGATGATATCGGTTCTTTGGCTATTATACATCAGATGCTAGAGAATGAGCCTAGAAAGAGCCTGCTAGAGTTCCGTCAGTCTCTACTCCTTTTGAGCTTTATTGCACATTGTACTGGATCCTTACACCTTAAGGTAGAGTTTCATAAGATAGACCAGGATGGAACACAACAGAACAAAAGACTTGCTAAATACAATGTCAAGAGAATTACTCACATAAACAAATTTCATAGGCTAAATTGTCAAAAGGCTGCAATGCACAGTTTGAGGATGGCAAGAAACCATTCTAGCTCAATCCAAGAAAGGTTAATTTATGAAGGATGGATTCTATATGATACTGGCTATAGGGAAGAAACTCTGGCAAGAGCTGATAGGTCAATTACAATTCAAAAATCATTTGAAGCCTTTTTTCTAAAAGCATATGTGTTGGCTGACACAAACTTGGATGCTGAATCTTCTTCTTATGTTATCCAACTTCTGGAAGCAGCGCTGAATTGTCCTTCAGATGGTCTTCGAAAAGGACAAGCGCTAAATAACTTAGGTAGTATTTATGTTGATTGTGGTAAGCTTGATCTTGCAAAAGCATGCTATGAGAATGCCCTTGCAATTAGGCACACAAGAGCTCATCAAGGTCTAGCACGTGTATATCATCAGAAAAATCAAAGAAAAGCTGCATATGATGAGATGACGAAGCTGATTGAGAAGGCAGCAAGCAATGCCTCGGCATATGAGAAACGATCAGAATATTGTGATCGTGAGATGGCAAAAGGTGATCTGGATATAGCAACTCAGCTGGATCCTTTAAGGACATATCCATATAGATACAGAGCAGCAGTGATGATGGATGAGCAGAAAGAGACTGAAGCTGTAGAAGAACTTACCAAGGCCATAAGTTTCAAGCCAGACCTGCAAATGCTTCATTTGAGAGCAGCATTTTATGAGTCAATGGGAGACCTTAACTCTGCTCTTCAAGATTGTCAAGCAGCACTTTGCTTAGACCCTAACCATACGGACACACTTGATCTGTATCAGAGGGCACAAAAACTAAGGTTTTAA 2904 0.4125 MRGMKLSERFKSTQVHALNSSETSGRRNKACDGSNSAKKIRSFLSMSKSNHSSTTSGIANLVAPFQLPSIDTLEPCIEPYHKPINLVETLAELYHRQECCHQSQKALLFVEQYSLLCNLRDQKLLRRCLRTARQNSVDVLSKVVLSAWLRFERREDELEGVSSMECGGGCILECPTLNLVHGFNPCSIKDRCQCGQESKQETSTDSVCLPDEEKKDVCFCIGNEEINCVRLRIAALSDPFKAMLYGGFAESKMRKIDFTKSGVCSKGMMAVELYSRAKRLDFFTPMTVLELLSFANRFCCEEMKSACDAYLASIVGSVDDALILFDYGLEERAPILVASCLQVFLRELPKTLYNLKVMKIFCSSEAKERLAMVRYDSFLLYYFLSQVAMEESMVSITTMMLLERLGECAKERWQKALAYHQLGCVMLERKEYKDSQRCFEVAAEAGHVYSLAGVARTKHKQGQQCSAYKLISSLIFEHKPTGWMYQERALHNTGRETSFDLDVATELDPSLSYPYKYRALAKVEEKQIMDGIVELDKIIGFKLSPDCLELRAWMFIALQNYESAMRDIRALLTLEPNYITSHGKITGKYLVHLLSNEVQQKSQAECWMQLYEQWSSVDDIGSLAIIHQMLENEPRKSLLEFRQSLLLLSFIAHCTGSLHLKVEFHKIDQDGTQQNKRLAKYNVKRITHINKFHRLNCQKAAMHSLRMARNHSSSIQERLIYEGWILYDTGYREETLARADRSITIQKSFEAFFLKAYVLADTNLDAESSSYVIQLLEAALNCPSDGLRKGQALNNLGSIYVDCGKLDLAKACYENALAIRHTRAHQGLARVYHQKNQRKAAYDEMTKLIEKAASNASAYEKRSEYCDREMAKGDLDIATQLDPLRTYPYRYRAAVMMDEQKETEAVEELTKAISFKPDLQMLHLRAAFYESMGDLNSALQDCQAALCLDPNHTDTLDLYQRAQKLRF 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0345 967 SUPERFAMILY TPR-like 696 820 IPR011990 GO:0005515
Lal22g0345 967 ProSiteProfiles TPR repeat profile. 790 823 IPR019734 GO:0005515
Lal22g0345 967 Coils Coil 842 862 - -
Lal22g0345 967 Pfam Tetratricopeptide repeat 791 819 IPR019734 GO:0005515
Lal22g0345 967 MobiDBLite consensus disorder prediction 12 31 - -
Lal22g0345 967 PANTHER ETO1-LIKE PROTEIN 2 692 964 - -
Lal22g0345 967 PANTHER ETO1-LIKE PROTEIN 2 1 650 - -
Lal22g0345 967 Gene3D Tetratricopeptide repeat domain 688 854 IPR011990 GO:0005515
Lal22g0345 967 SMART tpr_5 790 823 IPR019734 GO:0005515
Lal22g0345 967 SMART tpr_5 919 952 IPR019734 GO:0005515
Lal22g0345 967 SMART tpr_5 545 578 IPR019734 GO:0005515
Lal22g0345 967 Gene3D Potassium Channel Kv1.1; Chain A 207 353 IPR011333 -
Lal22g0345 967 Pfam BTB/POZ domain 215 312 IPR000210 GO:0005515
Lal22g0345 967 SMART BTB_4 215 315 IPR000210 GO:0005515
Lal22g0345 967 Gene3D Tetratricopeptide repeat domain 401 583 IPR011990 GO:0005515
Lal22g0345 967 ProSiteProfiles TPR repeat profile. 919 952 IPR019734 GO:0005515
Lal22g0345 967 PANTHER ETO1-RELATED 1 650 IPR044631 GO:0010105
Lal22g0345 967 PANTHER ETO1-RELATED 692 964 IPR044631 GO:0010105
Lal22g0345 967 SUPERFAMILY TPR-like 416 920 IPR011990 GO:0005515
Lal22g0345 967 MobiDBLite consensus disorder prediction 1 34 - -
Lal22g0345 967 Gene3D Tetratricopeptide repeat domain 865 966 IPR011990 GO:0005515
Lal22g0345 967 SUPERFAMILY POZ domain 209 312 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0345 Lal-Chr22 2197331 2206349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0345 791 951 Glycosyltransferase AT3G04240 27.485 2.02e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lal22g0345 BTB 6.6e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0345 - - gmx:100800568 1479.92