LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal22g0344	ATGGCTGCAGCCTTGGACTGCTGGTCCAACCGCACCACCACCACCACCACCACCACCGACGATGACACCGTGGAACAAGTCCTCATGAGGTCCCACCATAGATCCGAGGTACCCATAACCCCTTCACTCTCTTCATCTTCTTCCTCAACAAAAGACTCTTCTTTGCTTCACAACAAGTTACAGAAGCTGAGTCGCAACGTTTCTGAAGCCATAGCATCATTCAAAAATTCCCTCAATCGTGACCCATCTTCTTCAAAGATCGAAGCTTCTAGAAAAATCACATGGGGTACTGTTGTTAGGAACCTTACTCTACTCTACCCTGGAAGCCAGCTTCCTGAGAAGCTCATGTCTAATATTCGCAACCACTATGATTCCTTGCCTCTCAGTTATGGACAGGCAGAATTTGATATGAAAGATGTGTTTCTTCACATCAAGCTGATAGAGCAAGCATCTGAGACTGAACAACCTGCGATTTTGTTCCAAGAAGAATCTGATAATGATGGTGAACTTCAAGGGTCTTTGTTGAAGCTCACTTTTGCTTGTAACTCCCCAATTTCATGGCCTGCAATGTTAAGTGCATTGGATAGTTCATCCATCAGTTGCAAGAAGACGCAGATCTTTGAGAAGAAAGGTTTCACCTTGGGGATTGTTATTCTTGTTTTTCATTCTGAGCAAGATAGATTGGTTAGAATGCAAACCGAAAACGCTATAAAGTTTGCCATGAAGAAGCCAAAAACCAGTTCTGTGAAGCTTCCGTTTGGACTTTGTGGATGTCAAGAAGAGAACTTCAAGGGGAGAGAACTTGGAGAGAGTGAAGAAATCAGTGGTGATGCATGTCATGGGAAGGAGTTTGAGAATTCGAGCCAAAAGATTCAGCTTCAGACGCCATTGCCTAGTTCATCTTTTATTGTATCAGTAGATGAATGGCAGACAATTCAGTCAGGAGGGAAAAATATTGAGAAATGGTTATTGAATTCTGATGGTGTTGAGTTTACTGATCAGATTGGATTTGGACCTCATTCTTATAAAGGGGTCTACATGGGGAAAAGGGTTGGGATTGAGAAGCTTAAAGGGTGTGACAAAGGGAATTCCTATGAGTTCGAGCTCCGAAAAGATCTGTTGGAACTGATGACTTGTGGTCATAGAAACATTCTGCAATTTTGTGGTATTTGTGTGGATGATAATCATGGCTTGTGTGTGGTGACCAAGTACATGGATGGTGGATCTGTTCATGATTTGATGTTGAAGAACAAGAAACTCCAGGTTAAACATATTGTAAGAATAGCAGTAGATTTGGCTGAGGGGATGAAGTTTATGAATGATCATGGTGTTCCATATAGAGACCTCAATACTCAGAGAATTCTATTGGATAGGCATGGGAATGCTTGCTTGGGAGATATGGGTATAGTCACTGCCTGCAAGAGTATTGAAGAAGCAATGGAGTATGAAACTGATGGTTACAGGTGGCTAGCTCCAGAGATAATAGCAGGTGACCCAGAGAGTGTGAGAGAGACATGGATGAGTAATGTTTATAGTTATGGAATGGTGATTTGGGAAATGGTAACTGGTGAAGCAGCTTATTCAGCACTTTCACCAGTGCAAGCAGCAGTGGGCATTGCTGCATGTGGCCTTAGACCTGAAATCCCCAAAGATTGTCCTCAAACACTAAAATATCTTATGACAAAGTGCTGGCACAACACCCCTTCAAAACGTCCTCACTTTTCTGATATCTTAGCAATGTTACTGCGACCAAACAACAATAGGTAA	1767	0.4244	MAAALDCWSNRTTTTTTTTDDDTVEQVLMRSHHRSEVPITPSLSSSSSSTKDSSLLHNKLQKLSRNVSEAIASFKNSLNRDPSSSKIEASRKITWGTVVRNLTLLYPGSQLPEKLMSNIRNHYDSLPLSYGQAEFDMKDVFLHIKLIEQASETEQPAILFQEESDNDGELQGSLLKLTFACNSPISWPAMLSALDSSSISCKKTQIFEKKGFTLGIVILVFHSEQDRLVRMQTENAIKFAMKKPKTSSVKLPFGLCGCQEENFKGRELGESEEISGDACHGKEFENSSQKIQLQTPLPSSSFIVSVDEWQTIQSGGKNIEKWLLNSDGVEFTDQIGFGPHSYKGVYMGKRVGIEKLKGCDKGNSYEFELRKDLLELMTCGHRNILQFCGICVDDNHGLCVVTKYMDGGSVHDLMLKNKKLQVKHIVRIAVDLAEGMKFMNDHGVPYRDLNTQRILLDRHGNACLGDMGIVTACKSIEEAMEYETDGYRWLAPEIIAGDPESVRETWMSNVYSYGMVIWEMVTGEAAYSALSPVQAAVGIAACGLRPEIPKDCPQTLKYLMTKCWHNTPSKRPHFSDILAMLLRPNNNR	588

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal22g0344	588	MobiDBLite	consensus disorder prediction	37	55	-	-
Lal22g0344	588	Gene3D	Transferase(Phosphotransferase) domain 1	323	585	-	-
Lal22g0344	588	PANTHER	SERINE-THREONINE PROTEIN KINASE	1	585	-	-
Lal22g0344	588	MobiDBLite	consensus disorder prediction	1	55	-	-
Lal22g0344	588	PANTHER	PROTEIN KINASE SUPERFAMILY PROTEIN	1	585	-	-
Lal22g0344	588	MobiDBLite	consensus disorder prediction	7	24	-	-
Lal22g0344	588	SUPERFAMILY	Protein kinase-like (PK-like)	305	581	IPR011009	-
Lal22g0344	588	Pfam	Protein tyrosine and serine/threonine kinase	366	580	IPR001245	GO:0004672\|GO:0006468
Lal22g0344	588	ProSiteProfiles	Protein kinase domain profile.	329	583	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lal22g0344	588	PRINTS	Tyrosine kinase catalytic domain signature	402	415	IPR001245	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal22g0344	Lal-Chr22	2191700	2195268	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal22g0344	320	581	MAP Kinase Kinase Kinase	AT2G17700	33.835	8.98e-52	184

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-7	Lal22g0344		PK_Tyr_Ser-Thr	2.6e-42	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal22g0344	-		-	gmx:100801110	945.651

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lal22g0344	22	2191700	2195268	Lal22g0344	22	2191700	2195268	ECH
Lal18g1250	18	15175012	15185238	Lal22g0344	22	2191700	2195268	LSH
Lal5g0988	5	12139016	12143535	Lal22g0344	22	2191700	2195268	PCT
Lal22g0344	22	2191700	2195268	Lal5g0988	5	12139016	12143535	PCT

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