Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0342 ATGTCTTCTCAAGTACTTAATGTGCATAACCATAACATCCACTTTTTCAAGATAATTCTTGAAAGCAGCCTTCGGGATGGAGATCTGAGGATTCCAAGAAGTTTTGTGAAGCAATATGGGAAAGAATTATCAAACCCTGTAATCCTTAGGCTTCCAAATGGTGTTAAATGGAAAGTAAATTGGATAAAACATGATAGTGGTGATGTTTGGTTTCAGAAACTTTGGGAAAGATTTGCACATTCTTATTCCCTTAGTTTTGGCCATTTCTTAATTTTTAGATACGAAGGAAGATCCAATTTTCAGGTTCTGGTTTTTGATATAAGTGCTGTAGAAATAGATTACTCAAGTATAAAAAGCACATATGAAGATGTTGAGATTCTTGATGACAATGTCATACCAAAATCTCCATTAGTGATGAAGAAAACCAACAAGAGTGGACAACATACAAGCTACTTCAACCCACTTTCTGAAAATAAAAGGGGGGTAGCAGAGGAGACTCATTTAGAGCTAGGAAAATTTCAAAAGCAAAAACTATTCTGA 540 0.3481 MSSQVLNVHNHNIHFFKIILESSLRDGDLRIPRSFVKQYGKELSNPVILRLPNGVKWKVNWIKHDSGDVWFQKLWERFAHSYSLSFGHFLIFRYEGRSNFQVLVFDISAVEIDYSSIKSTYEDVEILDDNVIPKSPLVMKKTNKSGQHTSYFNPLSENKRGVAEETHLELGKFQKQKLF 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0342 179 ProSiteProfiles B3 DNA-binding domain profile. 14 108 IPR003340 GO:0003677
Lal22g0342 179 Gene3D - 7 109 IPR015300 -
Lal22g0342 179 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 138 - -
Lal22g0342 179 PANTHER B3 DOMAIN-CONTAINING 7 138 - -
Lal22g0342 179 SMART B3_2 15 108 IPR003340 GO:0003677
Lal22g0342 179 CDD B3_DNA 14 106 IPR003340 GO:0003677
Lal22g0342 179 SUPERFAMILY DNA-binding pseudobarrel domain 10 108 IPR015300 -
Lal22g0342 179 Pfam B3 DNA binding domain 15 105 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0342 Lal-Chr22 2164323 2168324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0342 15 130 B3 DNA Binding Superfamily AT1G49475 42.241 5.69e-24 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal22g0342 B3 3.3e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0342 - - lang:109356427 278.1