Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0332 ATGGCTTCTTCTTCTGGTACCTTGGACACTTCTGCAAACTCTTACAACAATTTCACCTTCTCAACACACCCTTTCATGACAACATCATTCTCTGATCTTTTAGCTTCTCCCATAGATGATGATAATAATAAGCATCGTGGTAGTGGTGGTTTATCAGAACGTGTAGCTGACAGAACTGGTTCTGGTGTACCAAAATTCAAGTCTATACAACCTCCTTCACTCCCTCTCTTTTCTCCTTCTTCTTACTTTGCTATCCCTCATGGTTTAAGCCCTGCCCAGTTTCTTGACTCACCTGTTCTCTTAAACTCTTCTCACATTTTGCCATCTCCAACAACTGGAGCATTTTCTGCTCAAAGTTACAATGATAGGAAGAACACCTCTGGGGGCAAAGAAGAGAAAAACTTCTCTTTTCAAACCCAATCAGGACCACCTCCTTCATCTACAGCCAATTTTCAATCATCAAATGGCACAGTTCAAACTCAACAACCATGGAGTTATGAGGAAGCTACAAAACATGATAGTTTTTCTTCTGGGAGGAGTTTGATGAAAACTGAAAACTCTTCTTTCATGCAGAGCTTTTCCCCTGAGATTGAAAGTGTCCAAACTAATAACCACAAATACCAACAACAACCACAAGTTCAGACCTTAAGTAGAAGGTCAGATGATGGTTACAATTGGAGGAAATATGGACAAAAACAAGTGAAAGGGAGTGAAAATCCAAGAAGTTATTACAAATGCACATACCCTAATTGCCCTACAAGGAAAAAGGTTGAGAGGTCTTTGGATGGACAAATTACTGAGATAATTTACAAGGGTAGTCATAACCATCCCAAGCCTCAAAACACTAGGAGAAACTCATCATCTTCATCTTCTGTTTCAATTATTCCTTCAAATCCCAACAGCTCAGAATTCAAAGATCAATCATATGCCACACTTGGCACTGGACAAATGGATTCTATTGCCACCCCTGAGAATTCATCATTATCAATAGTGGATGATGAGTATGATGAAGATGAACCTGATTCAAAAAGATGGAAAATTGAAGGTGAAAATGAGTGTATATCAGCTCCTGGAAGTAGAACTGTAAGAGAACCAAGGGTTGTTGTTCAAACAACTAGTGACATTGATATCTTATATGATGGGTATAGATGGAGGAAATATGGGCAGAAGGTAGTCAAGGGTAATCCAAATCCAAGGAGTTACTACAAGTGCACACACCAAGGATGTCCAGTGAGGAAGCATGTAGAGAGAGCCTCACATGACCTTAGAGCAGTGATCACAACCTACGAAGGAAAGCACATCCATGATGTCCCTGCAGCACATGGAAGTGGCAACCATTCTGTCATTAGGCCAATGCCAAACAACAACACTTCAAACTCCACCAATGCAGCCACTACTGCCATAAGGCCCATGCCATTGAATCACCCCACTAACAACATTTCTCTTCACAGTTCTAGACCACAAGCAACAGATCAAGGGCAATCACCCTTTACACTAGAGATGCTGCAGAGCTCAGGAAGTTTTGGATTATCAGGGTTTAGGAATCCTATGGGGTCTTACATGAATCAGCAACAACAACTATATGATAATGTGTTTTCTTCCGGAACCAAGGAGGAGCCCAAAGATGACATGTTTCTTGATTCTTTGCTATGCTGA 1656 0.4088 MASSSGTLDTSANSYNNFTFSTHPFMTTSFSDLLASPIDDDNNKHRGSGGLSERVADRTGSGVPKFKSIQPPSLPLFSPSSYFAIPHGLSPAQFLDSPVLLNSSHILPSPTTGAFSAQSYNDRKNTSGGKEEKNFSFQTQSGPPPSSTANFQSSNGTVQTQQPWSYEEATKHDSFSSGRSLMKTENSSFMQSFSPEIESVQTNNHKYQQQPQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTRKKVERSLDGQITEIIYKGSHNHPKPQNTRRNSSSSSSVSIIPSNPNSSEFKDQSYATLGTGQMDSIATPENSSLSIVDDEYDEDEPDSKRWKIEGENECISAPGSRTVREPRVVVQTTSDIDILYDGYRWRKYGQKVVKGNPNPRSYYKCTHQGCPVRKHVERASHDLRAVITTYEGKHIHDVPAAHGSGNHSVIRPMPNNNTSNSTNAATTAIRPMPLNHPTNNISLHSSRPQATDQGQSPFTLEMLQSSGSFGLSGFRNPMGSYMNQQQQLYDNVFSSGTKEEPKDDMFLDSLLC 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0332 551 MobiDBLite consensus disorder prediction 275 329 - -
Lal22g0332 551 SUPERFAMILY WRKY DNA-binding domain 219 279 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal22g0332 551 MobiDBLite consensus disorder prediction 270 341 - -
Lal22g0332 551 SMART WRKY_cls 220 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal22g0332 551 SMART WRKY_cls 378 437 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal22g0332 551 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 41 528 IPR044810 GO:0003700
Lal22g0332 551 SUPERFAMILY WRKY DNA-binding domain 370 438 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal22g0332 551 ProSiteProfiles WRKY domain profile. 373 438 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal22g0332 551 MobiDBLite consensus disorder prediction 205 225 - -
Lal22g0332 551 MobiDBLite consensus disorder prediction 205 220 - -
Lal22g0332 551 Gene3D WRKY domain 365 431 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal22g0332 551 ProSiteProfiles WRKY domain profile. 221 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal22g0332 551 Gene3D WRKY domain 206 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal22g0332 551 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 41 528 - -
Lal22g0332 551 MobiDBLite consensus disorder prediction 131 180 - -
Lal22g0332 551 MobiDBLite consensus disorder prediction 38 52 - -
Lal22g0332 551 Pfam WRKY DNA -binding domain 221 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal22g0332 551 Pfam WRKY DNA -binding domain 380 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal22g0332 551 MobiDBLite consensus disorder prediction 111 180 - -
Lal22g0332 551 MobiDBLite consensus disorder prediction 37 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0332 Lal-Chr22 2113617 2117179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0332 33 550 WRKY Transcription Factor Family AT2G38470 43.571 2.28e-108 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal22g0332 WRKY 3.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0332 K13424 - gmx:100127385 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0332 22 2113617 2117179 Lal22g0332 22 2113617 2117179 ECH
Lal18g1264 18 15269399 15272972 Lal22g0332 22 2113617 2117179 LSH
Lal22g0332 22 2113617 2117179 Lal6g0362 6 2302659 2305975 LSH
Lal5g1010 5 12460707 12465562 Lal22g0332 22 2113617 2117179 PCT
Lal3g0662 3 5175762 5179822 Lal22g0332 22 2113617 2117179 PCT
Lal22g0332 22 2113617 2117179 Lal5g1010 5 12460707 12465562 PCT
Lal22g0332 22 2113617 2117179 Lal3g0662 3 5175762 5179822 PCT