Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0326 ATGGAGAAACCATTGTTATTAGTGCTTTCAAATGGGATATCCTCATTTTTAAATTTATCATTTTCTGCAAACATTAACTCAGAACCTGTATCAATGTGTTACCGAAAGGCAGAGGAGATACTCAAGTTGCTGAAGCCGATTATTGATGCAAATCATTATTCTGATTTAGCTTCTGATGAAGTGCTTGATAAGTTATTTGAGGCACTTGATCAAACTATTGATGAGTTGGGAGAGCTTGTTGAGCACTGGCATCTATTGTCTAGCAAACTTTACTTTGTTATGCAAGCTGAATCCTTGATATCTAGAATCCAGTCTTTGGGGCTCAATATTTTAGGACAGCTGAAGGCTCCACAAGATTGTCTCCTTGATGATTTGGGACTTGAAACATCATCAATCATTAAAAAGGCTATTATGGAACAACAGGAAGGTGTAGGACCCAGTTCAGAGGTCCTGGCAAAGATTGCTGAGAACCTGGGCCTAAGGTCTAACCAGGAGGTTCTGATTGAGGCTGTGGCCCTTGAAAAGTTGAAGGATAATGCTGAACAAACTGAGAAGACTGTGGAAGCTGAATATATTGATCAAATGATCTTTGTTGTAACTCATATGCATGAGCGTCTTATTTTGCTTAAGCAAGCTGAGAGCCCTATCCCAGTTCCAGTACCAGCTGATTTCTGCTGTCCTCTCTCTTTGGGGTTGATGATAGATCCAGTCATTGTGGGATCAGGGCAAACCTATGAGCGGGCTTTCATCAAGAACTGGATTAGTCTTGGGCTTAATGTTTGTCCAAAGACACGTCAAACTCTGGTTCGTACCAACCTAATACCTAATTACACCGTGAAGGCATTAATTGTTAACTGGTGTGAATCAAACAATGTTAAGTTAGTTGATCCTATGATAAAGTCCACAAACTTAAATCAACCATCTCTCCATAATGGGTCAGTGGAATCTGGCTCAACCAAGGAATCACCGGTTATGACTTCTGGTGTAACCCACCAAGAGGGAACGTTGCCATTGCACCCTCTTTCAACTTCAGAAGGTTCCTTAGGTGGCATGGTTAATGGGCAGTATGTGGATCTTGTAGGAATATCTTCTACAGATTCAGATGACAGGTCTGCTAACTCAGATGAATGGAGCGTGAGTTCAATTGATCAAACATTAATGTCGCCATCTAGAAGGGAACCCTCCAATGCATTTACCTCAGAACAGTCTCCAGTCCATGTTAGAACTGCTTCCTATTCCAGTGCACTCTCTAGTGGGAATTTTCCTCAAGGCACACGAGGTGACAACAGCAGTCCTCCTCTTATGTCAACCACTCCAGTCCACAGCCGAGATGCTTCAGGGGAATTAAATTCAGTGTTAGATGCCACCACCATGGTGACTCTTCATAGAGAACCTGAGTTTCCACTCCAATTGGTAGAGCCAAATTCTCGAATCCAAACTGTTGGGAGGCGGCCATTGGAGAGGTTTGTTCCTAGGATAGTTCCTTCTCCTTCTATTGAAGCAAGAGCTGATCTTTCTGGTATTGAAACTGAGGTTCGGAAATTGGTTGAGAACTTGAAGAGCTCTTCTCTTGATACTCAGAGGGATGCAACATCAGAACTCCGTTTTCTTGCTAAGTACAATATGGATAACCGAATTGTGATTGCAAACTGTGGAGCCATTAATTTATTAGTCGATCTACTGCAATCAACCGATACAGTAATCCAGGAAAATTCTGTCACAACACTTCTTAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGTGCCATTGAACCTCTGATTCGTGTCCTTGAGACAGGGAGTCCAGAAGCCAAGGAGAATTCTGCTGCTACTCTTTTTAGCATATCCGTGATTGAGGAAAACAAGATCAGGATAGGAAGGTCTGGGGCAATTGGACCACTGGTTGATTTATTAGGGAACGGAACACCTAGGGGGAAGAGAGATGCTGCTACTGCATTGTTTAATTTGTCAATATTTCATGAAAACAAGGATCGGATTGTGGAAGCTGGTGCTGTGAAACACCTTGTAGACTTAATGGACCCTGCAGTTGGTATGGTTGATAAAGCTGTGGCTGTTTTAGCAAACCTTGCCACAATATCAGAAGGAAGGACTGAAATTTTTGAACAAGGTGGAATTCCTATTCTGGTTGAGGTTGTCGAGTTGGCTTCTCGGAGAGGAAAGGAGAATGCAGCAGCGGCTCTTCTACATCTATGTTCAAACAATCCGAGATATTTAAATACCGTGCTCCAAGAAGGAGCTGTCCCACCATTAGTAGCTTTGTCACAGTCAGGCACTCCAAGGGCCAAAGAAAAGGCCCTGGCTCTCCTTAATCAATTCAGAAACCAAAGACGAAATGGTGCTGGGAGGGGCTGA 2388 0.4267 MEKPLLLVLSNGISSFLNLSFSANINSEPVSMCYRKAEEILKLLKPIIDANHYSDLASDEVLDKLFEALDQTIDELGELVEHWHLLSSKLYFVMQAESLISRIQSLGLNILGQLKAPQDCLLDDLGLETSSIIKKAIMEQQEGVGPSSEVLAKIAENLGLRSNQEVLIEAVALEKLKDNAEQTEKTVEAEYIDQMIFVVTHMHERLILLKQAESPIPVPVPADFCCPLSLGLMIDPVIVGSGQTYERAFIKNWISLGLNVCPKTRQTLVRTNLIPNYTVKALIVNWCESNNVKLVDPMIKSTNLNQPSLHNGSVESGSTKESPVMTSGVTHQEGTLPLHPLSTSEGSLGGMVNGQYVDLVGISSTDSDDRSANSDEWSVSSIDQTLMSPSRREPSNAFTSEQSPVHVRTASYSSALSSGNFPQGTRGDNSSPPLMSTTPVHSRDASGELNSVLDATTMVTLHREPEFPLQLVEPNSRIQTVGRRPLERFVPRIVPSPSIEARADLSGIETEVRKLVENLKSSSLDTQRDATSELRFLAKYNMDNRIVIANCGAINLLVDLLQSTDTVIQENSVTTLLNLSINDNNKTAIANAGAIEPLIRVLETGSPEAKENSAATLFSISVIEENKIRIGRSGAIGPLVDLLGNGTPRGKRDAATALFNLSIFHENKDRIVEAGAVKHLVDLMDPAVGMVDKAVAVLANLATISEGRTEIFEQGGIPILVEVVELASRRGKENAAAALLHLCSNNPRYLNTVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRNQRRNGAGRG 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0326 795 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Lal22g0326 795 MobiDBLite consensus disorder prediction 305 338 - -
Lal22g0326 795 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 458 791 - -
Lal22g0326 795 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 341 - -
Lal22g0326 795 SMART arm_5 664 703 IPR000225 GO:0005515
Lal22g0326 795 SMART arm_5 541 581 IPR000225 GO:0005515
Lal22g0326 795 SMART arm_5 582 622 IPR000225 GO:0005515
Lal22g0326 795 SMART arm_5 623 663 IPR000225 GO:0005515
Lal22g0326 795 SMART arm_5 745 786 IPR000225 GO:0005515
Lal22g0326 795 SMART arm_5 704 744 IPR000225 GO:0005515
Lal22g0326 795 MobiDBLite consensus disorder prediction 365 445 - -
Lal22g0326 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 675 716 IPR000225 GO:0005515
Lal22g0326 795 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Lal22g0326 795 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Lal22g0326 795 Coils Coil 163 193 - -
Lal22g0326 795 SUPERFAMILY RING/U-box 210 296 - -
Lal22g0326 795 Pfam Armadillo/beta-catenin-like repeat 625 662 IPR000225 GO:0005515
Lal22g0326 795 Pfam Armadillo/beta-catenin-like repeat 666 702 IPR000225 GO:0005515
Lal22g0326 795 Pfam Armadillo/beta-catenin-like repeat 582 621 IPR000225 GO:0005515
Lal22g0326 795 Pfam Armadillo/beta-catenin-like repeat 543 580 IPR000225 GO:0005515
Lal22g0326 795 Gene3D - 501 791 IPR011989 -
Lal22g0326 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 634 676 IPR000225 GO:0005515
Lal22g0326 795 SUPERFAMILY ARM repeat 512 784 IPR016024 -
Lal22g0326 795 CDD RING-Ubox_PUB 224 266 IPR045210 -
Lal22g0326 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 552 594 IPR000225 GO:0005515
Lal22g0326 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 294 IPR013083 -
Lal22g0326 795 PANTHER U BOX DOMAIN-CONTAINING 7 341 - -
Lal22g0326 795 PANTHER U BOX DOMAIN-CONTAINING 458 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0326 Lal-Chr22 2061579 2066478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0326 180 795 U-box Gene Family AT2G23140 59.317 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0326 - - gmx:100813786 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1280 5 15494579 15500102 Lal22g0326 22 2061579 2066478 PCT
Lal3g0432 3 3004767 3011250 Lal22g0326 22 2061579 2066478 PCT
Lal22g0326 22 2061579 2066478 Lal5g1280 5 15494579 15500102 PCT
Lal22g0326 22 2061579 2066478 Lal3g0432 3 3004767 3011250 PCT