Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0318 ATGGAATCTGAAGTTTGCATGAATGGTTCGTGCCGCGGTGTTGGGTATGAACGTGAATGGAAGCAGGGTTGGTCTCTTGAATCTGGTGGATTTGCTCGTCTTTGCAACAATTGCGGATCTGCTTATGAGAATTCAATCTTCTGTGAGAAATTCCATCGTGAAGAAACTGGTTGGAGGGAGTGCAGCTATTGCAACAAGTCTATCCACTGTGGATGCATAGTATCATTGTCTTTGTTCAAGCACCTTGATTTTGGAGGTATAGGTTGTGTTACCTGTGTGAAGACTTCCCAACACTGTCTGGATACTGAAAATCCTAATGTGTCTTTGATGTCAACCAAAAATAATGCAAGTAATTGGCATGCTGCTCATAAGGAATATAGACTGTCGGTGGATAGTGTTGATGAAGGGAAACTTATGCAACTGTGTAGAATTATTCAAGCTAGTGAATCAAGCCAATGCCCTCAAGCTCAGAAAGACGGCATAGTTTCACGTATTGATTCAAACAGCCAAGAAGTTAAGTGTTCATTTAGGGAAGCGGATGCAAGGTTTTCGAAAGTGATGAAACCTTCAAGTCATACATTAACATCTACCTCATTAGGAAACAGTAGACCAACATGGGAGAATAAAAATATGCAGGATGCACTTGCACTAAGTATGTCACTGGGAACCCCATCAAAAAACACTGTCCTGCCTTCTGCTACAGAAGAGGCAAAAGAGAGAGTCGAGGGCAAAGAATCTCCTCCCTTTCAGCAAGGGCAAAGATCTCACCCTATATTGCCTAAACCACTGAAGACTGGGCTAACCATGGATCTGGAAACAAATAATGGAATGATTTCTGAGGCACGAGTTCCCCGGCCACCTGCTGAGTATAGTGGCAAGCATCAGTTACTGCCTCGATACTGGCCCAAAATAACTGATCAAGAGCTGGAGACATTGTCTATGGATTTGAAGTCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCCTGTGCAGAGGCTTACTTTCCTAATATTTCAAATTCAGAAGGCCTTCCTTTGCAGTTCCAAGATGTGAAGGGGAATGAGTGGACACTTCAGTTCAGATTTTGGCCTAATAACAATAGTAGGATGTATGTATTAGAGGGCGTGACACCTTGCATACAGTCCATGCAATTAAATGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGAGACAAATTTGTTTTGGGTTTCAGAAGGGCATCAAGTTCTATCGATACACAGGATGGCAATGCATCTGCTCAATCTAATGGCATCTCAACAAAGGAAACTGTTACTGGTCCAACTCAAAACCCGCGATCAAGAAGTAATTGCCCGCATCTTCTGTCAAAGAAAGAGATAGTGGAACCTCACTTAAATGGGCATCCAGAACATCTGCATTTGGGTACTGGAGGTGATAAAAAATGTGAGATGATAAAAAATGATTTGTTGCAGCAACCGATTTCAGATTCAGAGAAGAAGAGGACTCGTAATATTGGGTCTAAAAGTAAGAGGCTGCTCATTCAAAGTGAAGATGCAATGGGGTTGAGACTTACATGGGAAGAAACACAGGGCTTGCTTCATCCGCCACCTAGTGTCAAGCCAAACATTGTAACAATTGAGGACCAAGAAATTGAAGAGTACCATGCACCCCCGATTATTGGAAAGAGAACTATATTCAATGCCAGTCCAACTGGGAGGATAGAACAGTGGGCTCACTGTGATGATTGCTCTAAATGGCGCAGGGTTCCTGTAAATGTTCTTCCTCCCAAGTGGACATGTTCCGATAATGTTTGGGATGCAAACAGATCTTCATGTTCTGCACCTGAAGAGCGGAGTGGAATGGAATTAGATAATCTTCTGAGAACCAGCAAAGTTTATAAGAAGCGAAGAAGGGTAGAAAAGAGTGAGTCAATTGAAGAACATGAGCCTTCTGGCTTAGAAGCTCTTGCCAATGCAGCAGTTTTGGGGGATATTCTTCTTGACCCTGCTGAGCCATCATCTGGAGTCACCACAAAACATCCAAGGCACCGTCCTGGCTGCACTTGCATCGTGTGCATTCAGCCTCCAAGTGGGAAAGGGAAACATAAACCAACATGTAACTGCCTTGCATGCAAAACAGTGAAGCGCCGGTTCAAGACCCTTAAGTTGCGCAAGAGGAAACGCCAATCAGAACGTGAAGCAGATGCACCTGCTTCCCTGAAAGATCAAATTCAGCCTATGGATGAGGCAGATGCCAATAGAGCATCAAAAGATGATACAAGTCAATTAGATGAACCCAGTGCTGCTGCACATATAGATCTCAATTGTGATCCCCACAGCCATGACATGCCAGCGGATCATATTTCTGGACGTAGCGCATGA 2412 0.4374 MESEVCMNGSCRGVGYEREWKQGWSLESGGFARLCNNCGSAYENSIFCEKFHREETGWRECSYCNKSIHCGCIVSLSLFKHLDFGGIGCVTCVKTSQHCLDTENPNVSLMSTKNNASNWHAAHKEYRLSVDSVDEGKLMQLCRIIQASESSQCPQAQKDGIVSRIDSNSQEVKCSFREADARFSKVMKPSSHTLTSTSLGNSRPTWENKNMQDALALSMSLGTPSKNTVLPSATEEAKERVEGKESPPFQQGQRSHPILPKPLKTGLTMDLETNNGMISEARVPRPPAEYSGKHQLLPRYWPKITDQELETLSMDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPNISNSEGLPLQFQDVKGNEWTLQFRFWPNNNSRMYVLEGVTPCIQSMQLNAGDTVTFSRIDPGDKFVLGFRRASSSIDTQDGNASAQSNGISTKETVTGPTQNPRSRSNCPHLLSKKEIVEPHLNGHPEHLHLGTGGDKKCEMIKNDLLQQPISDSEKKRTRNIGSKSKRLLIQSEDAMGLRLTWEETQGLLHPPPSVKPNIVTIEDQEIEEYHAPPIIGKRTIFNASPTGRIEQWAHCDDCSKWRRVPVNVLPPKWTCSDNVWDANRSSCSAPEERSGMELDNLLRTSKVYKKRRRVEKSESIEEHEPSGLEALANAAVLGDILLDPAEPSSGVTTKHPRHRPGCTCIVCIQPPSGKGKHKPTCNCLACKTVKRRFKTLKLRKRKRQSEREADAPASLKDQIQPMDEADANRASKDDTSQLDEPSAAAHIDLNCDPHSHDMPADHISGRSA 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0318 803 CDD B3_DNA 322 423 IPR003340 GO:0003677
Lal22g0318 803 ProSiteProfiles B3 DNA-binding domain profile. 324 425 IPR003340 GO:0003677
Lal22g0318 803 MobiDBLite consensus disorder prediction 757 771 - -
Lal22g0318 803 MobiDBLite consensus disorder prediction 244 264 - -
Lal22g0318 803 Gene3D - 302 429 IPR015300 -
Lal22g0318 803 Pfam CW-type Zinc Finger 586 627 IPR011124 GO:0008270
Lal22g0318 803 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 795 - -
Lal22g0318 803 MobiDBLite consensus disorder prediction 732 803 - -
Lal22g0318 803 Pfam B3 DNA binding domain 324 424 IPR003340 GO:0003677
Lal22g0318 803 Gene3D - 584 638 - -
Lal22g0318 803 SMART B3_2 324 425 IPR003340 GO:0003677
Lal22g0318 803 MobiDBLite consensus disorder prediction 785 803 - -
Lal22g0318 803 MobiDBLite consensus disorder prediction 428 461 - -
Lal22g0318 803 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 795 - -
Lal22g0318 803 MobiDBLite consensus disorder prediction 428 462 - -
Lal22g0318 803 SUPERFAMILY DNA-binding pseudobarrel domain 322 426 IPR015300 -
Lal22g0318 803 ProSiteProfiles Zinc finger CW-type profile. 581 630 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0318 Lal-Chr22 2017991 2024359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0318 1 792 B3 DNA Binding Superfamily AT2G30470 47.821 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal22g0318 B3 1.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0318 - - lang:109356710 1514.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0318 22 2017991 2024359 Lal22g0318 22 2017991 2024359 ECH
Lal22g0318 22 2017991 2024359 Lal6g0350 6 2213676 2220066 LSH
Lal5g1264 5 15366268 15375048 Lal22g0318 22 2017991 2024359 PCT
Lal3g0463 3 3173838 3181383 Lal22g0318 22 2017991 2024359 PCT
Lal11g0574 11 4619315 4627443 Lal22g0318 22 2017991 2024359 PCT
Lal22g0318 22 2017991 2024359 Lal5g1264 5 15366268 15375048 PCT
Lal22g0318 22 2017991 2024359 Lal3g0463 3 3173838 3181383 PCT
Lal22g0318 22 2017991 2024359 Lal11g0574 11 4619315 4627443 PCT