Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0313 ATGGCAAAAGGGTGCGCCAACAACACTTATGAAGAGGCTAGGAAACAAAGACTTGAAGAAAACAAGAGGAAGTTTGAGGATTTGGGAATTTCGAAGATTTCAAAAAATCTTACTGAAGCCACAACTCCTGTGAAGAAGACACAACATCGTCTTCCTAAATCGAAATCAAAGACTAATGATCTAGTGGAACCTAGGCGCTCTTCTCGAGCGCGAAACCCAATTACTTCGTATAGTGAAGAGGTTGGCATAGACCTTCCAACTTTGAGGAAGAGGCCACGATCAAATTCTTCAAGCTGCTACAGTTATATTGCAAGACCACTAGATGAAATCAAACAAGCTTCAGATAAACAAAGATCTCGTGCTTGGGAGGCTGCAGAGGAACTCCAGACCAATTTGCAATCTAAAAACCCAACATTTATAAAGTCAATGGTTCGGTCTCATGTTTATAGCTGCTTTTGGTTGGGTCTTCCTTCTAAATTTTGTGAGGAACATCTTCCAAAAACTCATTATAACATGATTTTAGAGGATGAGAATGGCTCAGAATATGACGCAGTTTACATTGGCTCAAGAAGTGGGCTTAGTGGTGGCTGGAGAGCATTTGCATTGGAACATAAGTTGGATGATGGTGATGCACTTGTTTTTGAATTGATTGAACCAGCAAGATTTAAGATTTATACTGCTAAAGCATTTCCAGATTCAATTGAAGAAGATAAAAAGGAGGAGTCAGAGGAGAAAGAAGGAAACTTGCATGCAACAAGAGCACTAAAAGCTGGAAGTAATGGTGAAACAAAATCGAAGAAGACAAAAAAGCCAAAACAGACCACTGTACATGAAACCAATGAATCAGAGAGTTCTCAGGAGCATCTGTCACAAAGTAGCATGGACAATGAAGTCAAAGCACAAGAGGTAAGCCCAACTAAGATAACAGTTTCTCAGAAAACAATGCAAAGGAAATCTACAAGGTGTGCTACTGCTGAGTCAAAAGTGGAAGCACAAGTTGAAAGTGTGAAACCAAAGGGGAAAAATCTTGTCAAACCTCGAGGCGATAACCCCAGTAAGAAACGAAAGGCTACAAAAAATCTCAGTCAAAATGCTGGCCAGTTAATGGATGTTGAACCAGTTGAAGAAGCAAGCAAAGATGTTTCACCCATTGAAAATGTGAAACCGAAGACAAATAATATTGTCAACCCTCGAGGGGCTAAACCAAGCAAGAAACCAAAGTCTACAGATAATCTTGTTCAGGATGCTGGTGAGTTACAGAAAGTTAAGCCAGTTGAGGAAGCAAGAAAATGTGTTTCACAAAAACCTCGAAAAAAAGCAGCTGGGAAGCTTTTCAGGAAGAGGGCTTAG 1350 0.4015 MAKGCANNTYEEARKQRLEENKRKFEDLGISKISKNLTEATTPVKKTQHRLPKSKSKTNDLVEPRRSSRARNPITSYSEEVGIDLPTLRKRPRSNSSSCYSYIARPLDEIKQASDKQRSRAWEAAEELQTNLQSKNPTFIKSMVRSHVYSCFWLGLPSKFCEEHLPKTHYNMILEDENGSEYDAVYIGSRSGLSGGWRAFALEHKLDDGDALVFELIEPARFKIYTAKAFPDSIEEDKKEESEEKEGNLHATRALKAGSNGETKSKKTKKPKQTTVHETNESESSQEHLSQSSMDNEVKAQEVSPTKITVSQKTMQRKSTRCATAESKVEAQVESVKPKGKNLVKPRGDNPSKKRKATKNLSQNAGQLMDVEPVEEASKDVSPIENVKPKTNNIVNPRGAKPSKKPKSTDNLVQDAGELQKVKPVEEARKCVSQKPRKKAAGKLFRKRA 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0313 449 Gene3D - 114 229 IPR015300 -
Lal22g0313 449 MobiDBLite consensus disorder prediction 435 449 - -
Lal22g0313 449 MobiDBLite consensus disorder prediction 53 67 - -
Lal22g0313 449 SMART B3_2 139 228 IPR003340 GO:0003677
Lal22g0313 449 MobiDBLite consensus disorder prediction 38 73 - -
Lal22g0313 449 MobiDBLite consensus disorder prediction 427 449 - -
Lal22g0313 449 MobiDBLite consensus disorder prediction 260 284 - -
Lal22g0313 449 ProSiteProfiles B3 DNA-binding domain profile. 139 230 IPR003340 GO:0003677
Lal22g0313 449 MobiDBLite consensus disorder prediction 332 356 - -
Lal22g0313 449 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 243 IPR044837 -
Lal22g0313 449 SUPERFAMILY DNA-binding pseudobarrel domain 132 226 IPR015300 -
Lal22g0313 449 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 4 243 - -
Lal22g0313 449 MobiDBLite consensus disorder prediction 285 326 - -
Lal22g0313 449 MobiDBLite consensus disorder prediction 234 411 - -
Lal22g0313 449 MobiDBLite consensus disorder prediction 234 251 - -
Lal22g0313 449 CDD B3_DNA 137 225 IPR003340 GO:0003677
Lal22g0313 449 Pfam B3 DNA binding domain 139 223 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0313 Lal-Chr22 1982850 1988142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0313 10 229 B3 DNA Binding Superfamily AT5G58280 48.988 8.44e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal22g0313 B3 1.9e-15 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0313 22 1982850 1988142 Lal22g0313 22 1982850 1988142 ECH