Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0309 ATGGCTGATCCTCAAAAAATTCACCCTGTCCATGATGTTGAAGCACCACATCAACCTTCAGCACCTTTGGTACCAACGAACATGTCTAAATCTGAAGAGGGTGATCCTGAAAATTTGGAGCAACACCCTCTTCCACCTCCTCTACATTCCAAGCCACCAAAGAAAAGAAGAAGCTGTTGCTGCAGGTTTTTCTGTTGGTTCATAAGTATATTGCTGATTTTGATTGTTGCAATTGGCATTACTATTGGGATACTATACCTTGTGTTTAGGCCAAAGCTTCCAAAATACTCAGTTGATGAACTCAGAGTTACCAACTTTGATCTTTCTACAAATAATAGCTTATCTGTTACTTTTAATGTGACAATCACTGCTAGAAATCCAAATAAAAAGATTGGAATAGACTATAGAGGTGGAAGCCATATAAGTGCTTGGTATAATGACACAAAACTATGTGAAGGGTCTTTGCCAAAATTCTACCAGGGTCATAGAAACATTACAGTGCTTAATATACCTTTGTTAGGGCAAACACAAGATGCAAGTGGCCTTCAAAATTCACTTCAGCAGCAGCTGCAACAAAATGGTAATGTTACCCTTAATCTTAAGGTCAAACAACCTGTGAGGATTAAGCTTGGAAAGTTGAAGCTATTTAAAATCAATTTCAAGGTTAAGTGCAAGCTTGTGGTGGATAGTCTTGATCAGAATAATTCTATTAGAATTAAGAGCAATAGCTGTAAGTTTAGCCTATGA 747 0.3748 MADPQKIHPVHDVEAPHQPSAPLVPTNMSKSEEGDPENLEQHPLPPPLHSKPPKKRRSCCCRFFCWFISILLILIVAIGITIGILYLVFRPKLPKYSVDELRVTNFDLSTNNSLSVTFNVTITARNPNKKIGIDYRGGSHISAWYNDTKLCEGSLPKFYQGHRNITVLNIPLLGQTQDASGLQNSLQQQLQQNGNVTLNLKVKQPVRIKLGKLKLFKINFKVKCKLVVDSLDQNNSIRIKSNSCKFSL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0309 248 Gene3D - 88 232 - -
Lal22g0309 248 MobiDBLite consensus disorder prediction 1 54 - -
Lal22g0309 248 Pfam Late embryogenesis abundant protein 121 224 IPR004864 -
Lal22g0309 248 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 41 246 - -
Lal22g0309 248 SUPERFAMILY LEA14-like 74 208 - -
Lal22g0309 248 PANTHER EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN, PUTATIVE-RELATED 41 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0309 Lal-Chr22 1948701 1949447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0309 54 248 EF-hand Containing Proteins AT5G21130 32.323 1.67e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0309 - - gmx:100778798 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1242 5 15156890 15157642 Lal22g0309 22 1948701 1949447 PCT
Lal3g0484 3 3432190 3432969 Lal22g0309 22 1948701 1949447 PCT
Lal18g0368 18 3135445 3139477 Lal22g0309 22 1948701 1949447 PCT
Lal22g0309 22 1948701 1949447 Lal5g1242 5 15156890 15157642 PCT
Lal22g0309 22 1948701 1949447 Lal3g0484 3 3432190 3432969 PCT
Lal22g0309 22 1948701 1949447 Lal18g0368 18 3135445 3139477 PCT