Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0304 ATGCCTGCTATCACATCAGACACAAACAAACGGGTTGTTGATGTGGGGATGGAGTGCATTGGCATGTGGGAGAATGATATAGGGGAATGCAATGGGGTTCAGAATATCGGTGATGCTGGCTCTGAGCTAGGGGTTTACCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAACTATGGCATGCTTGTGCGGGTCCATTGGTGTCCCTACCAAATGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCACAGTGAGCAGGTATCCGCCACGACTAACAGAGAAATTGATGGGCACATACCCAATTACCCAAGCTTGCCACCTCAGTTGATTTGCCAGCTTCACAATCTTACGATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGCTGCAGCCATTGACTCCGCAAGAGCAGAAGGATGCATTTCTTCCTATGGAATTAGGCATTCCAAGTAAGCAGCCCTCAAATTATTTTTGCAAGACCTTAACCGCAAGTGACACCAGCACACATGGAGGGTTCTCTGTTCCCCGTCGTGCAGCTGAAAAAGTTTTCCCTCCACTGGATTTCTCACTGCAACCACCTGCACAAGAACTCATTGCCAGGGATCTCCATGATGTTGAGTGGAAATTTCGGCATATTTTCCGGGGGCAGCCAAAACGGCACCTTCTTACAACAGGATGGAGTGTATTTGTTAGTGCGAAAAGGCTTGTTGCTGGAGATTCTGTACTTTTCATATGGAATGAAAAAAATCAGCTTCTTTTGGGAATACGTCGTGCCAATCGGCCACAAACTGTGATGCCATCGTCAGTTCTATCCAGTGATAGTATGCACATTGGGCTTCTCGCTGCTGCTGCCCATGCTGCAGCAACCAATAGCTGCTTTACAGTGTTCTATAATCCAAGGGCTAGCCCATCCGAGTTCGTCATTCCACTATCAAAATATATTAAAGCCGTGTATCATACACGTGTTTCTGTTGGTATGCGTTTTAGGATGCTTTTTGAGACTGAAGAGTCAAGTGTTCGTAGGTACATGGGTACTATAACTGGCATAAGTGACTTGGATCCTGTTCGTTGGCCAAATTCTCATTGGCGATCAGTCAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGGGTTTCATTATGGGAAATTGAGCCTTTAACAACATTTCCGATGTATCCATCACTATTTCCCCTCAGATTGAAACGTCCATGGCATCCTGGCACCTCATCTTTTCTTGATGGCAGAGACGAGACAACTAATGGGCTAATGTGGCTTAGAGGTGGACCTGGAGACCAAGGAGTCAATTCCCTAAACTTTCAAGGTGCCGGTTTGTTTCCCTGGATGCAGCAGAGGCTGGATCCAACTATGCTTGGAAATGATCAGAATCAGCAGTATCAAGCCATGTTAGCAGCAGCTGGTTTGCAGAACCTAGGAGGTGGAGATCTCTTGAGGCAACAAATGATGAATTTTCAACAGCCTTTCTATCTTCAACAATCAGGAAACTCCAACCCTCAGTTGCAGCTTCAGCAGCAACAAGCGATTCAGCAATCAGTGTCTCCTAATATTCTGCAACCACAAGCCCAAGTATTGACTGAGAACCTGTCGCAGCAGCTCCTTAGGAAACCACCAATCAATCGAGAAGACCAGGCACAGCAGCAGCAGCACACTTATCAAGATTCGCTTTTAATTCAAACTGATCCGCTCCATCAGAGGCAACACTCTAATTTGCCTTCACCATCATATTCAAAACCAGATTTCTTTGATTCAAGCATAAAGTTATCTGCTGCTTCAGTTTCACCAGGACAGAACATGCTTGGGTCACTTTGTCCTGAAGGGAGTGGTAATCTCTTGAATTTATCCAGAAGTGCTCAGTCCATGCTAACTGAACAACAGTTACACCATCAATCATGGGCACCCGAGTATACACCTATGCAGGTCAATGCCTTTGGCAACTCAGTGTCAAACATGCAATATTCTGGAAAAGATACTACAATGGTGTCACCACATTGCAATCCAGATTCCCAAAATTCTACTCTCTTTGGTGTCAATATCGATTCATCTGGCCTTCTTCTTCCCACCACTGTCCCCCGTTATACTACTTCATCAGCTGACACTGATTCATCGACAATGCCTTTGGGGGAATCTGGATTCCAGGGTTCTCTTTATGGTTGTGTGCAAGACTCATCAGAGTTGTTGCAAAGTCCAGGGCAAGTTGACCCTCTAAACCAGACACGAACATTTGTGAAGGTTTACAAATCAGGATCAGTTGGGCGTTCACTCGACATTTCTCGGTTCAGCAGCTATCATGAACTGCGAGAGGAATTGGCTCAGATGTTTGCGATTGAGGGGAAATTAGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGATGATCCGTGGGAATATTCAGAAAATGTGAGAGGAAGCAATGGAATCCTTCAATGTTCAGAAAGTGTTCAGGAGAGGATGAATAGCACTAGTGCAGATTCTGAGGACACTGTTGTTGATGTGGGGATGGAGTGCATTGGCATGTGGGAGAATGATATAGGGGAATGCAATGGGGTTCAGAATATCGGTGATGCTGGCTCTGAGCTAGGGGTTTACGTATTTGTGTGA 2706 0.4582 MPAITSDTNKRVVDVGMECIGMWENDIGECNGVQNIGDAGSELGVYLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPNAGTRVVYFPQGHSEQVSATTNREIDGHIPNYPSLPPQLICQLHNLTMHADVETDEVYAQMTLQPLTPQEQKDAFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLDGRDETTNGLMWLRGGPGDQGVNSLNFQGAGLFPWMQQRLDPTMLGNDQNQQYQAMLAAAGLQNLGGGDLLRQQMMNFQQPFYLQQSGNSNPQLQLQQQQAIQQSVSPNILQPQAQVLTENLSQQLLRKPPINREDQAQQQQHTYQDSLLIQTDPLHQRQHSNLPSPSYSKPDFFDSSIKLSAASVSPGQNMLGSLCPEGSGNLLNLSRSAQSMLTEQQLHHQSWAPEYTPMQVNAFGNSVSNMQYSGKDTTMVSPHCNPDSQNSTLFGVNIDSSGLLLPTTVPRYTTSSADTDSSTMPLGESGFQGSLYGCVQDSSELLQSPGQVDPLNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFAIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWEYSENVRGSNGILQCSESVQERMNSTSADSEDTVVDVGMECIGMWENDIGECNGVQNIGDAGSELGVYVFV 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0304 901 ProSiteProfiles B3 DNA-binding domain profile. 172 274 IPR003340 GO:0003677
Lal22g0304 901 Pfam B3 DNA binding domain 172 273 IPR003340 GO:0003677
Lal22g0304 901 Gene3D - 759 850 - -
Lal22g0304 901 SUPERFAMILY CAD & PB1 domains 761 840 - -
Lal22g0304 901 SMART B3_2 172 274 IPR003340 GO:0003677
Lal22g0304 901 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 47 835 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal22g0304 901 ProSiteProfiles PB1 domain profile. 763 848 IPR000270 GO:0005515
Lal22g0304 901 SUPERFAMILY DNA-binding pseudobarrel domain 157 301 IPR015300 -
Lal22g0304 901 CDD B3_DNA 171 272 IPR003340 GO:0003677
Lal22g0304 901 PANTHER AUXIN RESPONSE FACTOR 47 835 - -
Lal22g0304 901 Gene3D - 170 273 IPR015300 -
Lal22g0304 901 Pfam Auxin response factor 298 381 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal22g0304 901 Gene3D - 336 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0304 Lal-Chr22 1911461 1929817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0304 142 831 B3 DNA Binding Superfamily AT5G37020 69.330 0.0 886
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal22g0304 B3 8.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0304 - - gmx:100784804 1394.02