Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0291 ATGGTTTTGTCTTGGACTAGAGGAAGAGTTTTTCGCCGTTCCCGGAAGGGAAAAGATCTTAATTCCGTTGGTGCCTTGGACGTTGAGATTTCAACACCGACTCATTTTCGATGTCCAATCACACTAGACATGATGAAGGACCCCGTAACATTGTCTACAGGGATAACCTACGATCGTGATAGCATCGAGAAATGGTTCAACAATGGGAACAACACGTGCCCAGTAACCAAAAGAGTCCTCACAACTTTTGACATGATTCCAAACCATGCCTTAAGGAAGATGATTCAAGATTGGTGTTCAGAGCACCGTTCTTTTGGGATAGAAAGGATCCCTACCCCTCGTATACCAGTCACACAGTACCAGGTTTCAGATACGTGTACGAGGATCATGTCTTGTGCACAACTTGGTGATGTAAACAAGTGTTTGGAATTGGTGAGGAAGATCAAGGCTTGGGGGAAAGAGAGTGAGAGGAACAAGAGGTGCATAATGATGACTAGTGCTGCTTCTATTGTGCTTGCTAAGGTCTTTGACCTTTTCTCATCATCATGTGGTGGATCCATTGAGAAAAGCAACGTTGGAACTATCTTGGAAGAGATTTTGGGTGTGTTGATATGGATGCGCCCTCTTTCACAACAAGGTAAATCAATTTTAGGCTCATTGAGTTCCATGAATTGTATGGTTTGGTTCCTAAATGGTAAAGACCTTTCTTCAAGACAAAGTGCTGTTCTATTGCTCAAAGAAATGAACCTTGAGGCATTGGAAAAAACTGAAGGAGTTATTGAAGGTTTGGTTAAGATGATGAAGGAGCCTATTGGACATGCTGCTGCTATTAAAGCATGCTTGTCAATAATTTTCAACATGGTTTCTTCATCTAAGAATAGAGAAGTAATAGCACAAAGAATTGTGGAATTGGGTTTGGTTTTAATTTTGTTGGAAGTGGTAGTTGATGCTGAAAGAGGAGTATGTGAGAAGGCTTTGGGGGTGCTTGATTGCATTTGTGACTGCAAACAAGGAAAAGAGATGGCTAAGTCAAATGCTTTGACTTTGCCTCTTGTGATTAAAAAACTTTTGAGGGTGTCTGATTTGAGTTCTAGTTTTGCAGTGTCTATTGTTTGGAAACTTTGTGCCAAGACAGAGGAAAGGGTGTTGATTGAAGTACTTCAGGTTGGGTTGTTTCAGAAACTATTGGTTATGTTGCAGGTGGGTTGTGGTGATAGGACAAAGGAGAAGGCTACTGAGTTGTTGAAATTGTTGAATGGTTATAGGTGCAAAGCAGAGTGTGTTGATTCTTCATCATTGAATTTTAAGCACCTTAAGAAATGA 1323 0.4082 MVLSWTRGRVFRRSRKGKDLNSVGALDVEISTPTHFRCPITLDMMKDPVTLSTGITYDRDSIEKWFNNGNNTCPVTKRVLTTFDMIPNHALRKMIQDWCSEHRSFGIERIPTPRIPVTQYQVSDTCTRIMSCAQLGDVNKCLELVRKIKAWGKESERNKRCIMMTSAASIVLAKVFDLFSSSCGGSIEKSNVGTILEEILGVLIWMRPLSQQGKSILGSLSSMNCMVWFLNGKDLSSRQSAVLLLKEMNLEALEKTEGVIEGLVKMMKEPIGHAAAIKACLSIIFNMVSSSKNREVIAQRIVELGLVLILLEVVVDAERGVCEKALGVLDCICDCKQGKEMAKSNALTLPLVIKKLLRVSDLSSSFAVSIVWKLCAKTEERVLIEVLQVGLFQKLLVMLQVGCGDRTKEKATELLKLLNGYRCKAECVDSSSLNFKHLKK 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0291 440 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 440 - -
Lal22g0291 440 CDD RING-Ubox_PUB 36 77 IPR045210 -
Lal22g0291 440 PANTHER WDSAM1 PROTEIN 9 440 IPR045185 GO:0061630
Lal22g0291 440 SUPERFAMILY ARM repeat 220 420 IPR016024 -
Lal22g0291 440 Gene3D - 222 430 IPR011989 -
Lal22g0291 440 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Lal22g0291 440 Pfam U-box domain 33 103 IPR003613 GO:0004842|GO:0016567
Lal22g0291 440 SUPERFAMILY RING/U-box 28 107 - -
Lal22g0291 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 107 IPR013083 -
Lal22g0291 440 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0291 Lal-Chr22 1845156 1846478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0291 29 440 U-box Gene Family AT5G37490 43.810 5.04e-110 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0291 - - gmx:100795913 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0291 22 1845156 1846478 Lal6g0315 6 2025616 2026935 LSH