Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0288 ATGTCTTTCTCTGTCACCGAACCATGCAAGAAGAGAAAACTACGAAACCCAAAAGTTTTCAGGTTGAATTCTTTTCCTGTCACATTCTCTGGTCCTTTCCACGAAAATGTTAGACTCTTTCTTGAAGAATGTGGAGATCTGGATGAGTACACTGTGCTTGGTAACCCTCTGTGGTGCACCCTTCTCGTTCACAACAACACTAACCTCATGGCTCCTCTCTACACTCTCGAAGAAGATGTCTACCACTCTTCACACCCTTTCTGTCACTATTGTCGCTCTGCTGGTTGGAGTGGACATTTTGTAACAAAGAGAAGGTACCATTTCATAATCCCAATGAACAGTGGGTGGCATAAACCCTTAGATGATAGTGCTATTGATAATCAGAGTCATCTGTTGCATGGTGTGATTCACTGCAATGGCTGTGGCCATTTGATTTGCATTAATGGCTATGAAGGGGGTTCCAAAGTCCTCAGTGGCCGAGAAATCATGGATCTATGGGACAGGATTTGCACAAACCTTAAAGCAAGGAGAATTTCAGTAGAAGATGTTTCAAGGAAGAGGTCTATGGATCTTCGCCTTCTTCATGGAGTTGCGTATGGCCACTCTTGGTTTGGTAGGTGGGGTTATAGATTTTTTCGCGGAAGCTTTGGGGTGACAGAGAAAAATTACTATGAAGCAATTGAGACTCTTGGTTCTTGGGAGCTTGATGAGATTGCAAGAGATTTGAGCAAGGCAAAGCACAGCAAGGAAATCAAACAAATGATTCAGTGCTATAGAGATATGAGTGATACTCAGATTACCACTATAAGGGATCTTCTCAGGTTAATGCTTACTGTTAAGCCTCGCGCTCCTGCGACTAAGATAACAGTCACATGTTCTGTTCCTTCATCATTCAACTTAAGGAATACAACCAGACATGCACTCTCAAACGGAACAAGTATAATGAAGGAGAAATCTGTGAGGTACAAGAAGTTCAATGGCATAGTAGCTAACATGGATAGCAGGTGGCCTAAAAGGAGATTAGAATTTGCAGCACAAGTGATTGTAGATGCATTGAATGAGCACAAGGGTATGAAATCAGGTTCTGCTGGAATGACAAGGCAAGATGTGAGAGATGCAGCTAGGCTTCACATTGGTGACACAGGCTTACTTGATTATGTGCTGAAATCACTGAACAATGTGATTGTTGGAAATCATGTGGTTCGTCGTATGGTGAATCCTTACACTAGGATCCTTGAATATACAATTCATGAGATTGGCAATGGGATTAAAGAACCTGAAATGGAGCCTGAGATAATGGCTCATGTATATCCCAGAGTAGAGTCATCTAGGAGGCCTAATTTTGATGTTAATAATGATGTAGTATATGTGTACAAGGATGTGCTATTAGGGTATCCAGATTCAGAACAAGTGGACATGGCAGTTCAGACAATTCTTGACAGCAGGCACTTTGTGAAGGAGTTTGGACTAATGGATGAAATGGAGCAGGTATTGACATTCATTTGCAAGATGAAACCAAATGTTGCTGACACTAAATATGAGTTGAGAGAGGCAGGTTGTAGTGTGATGGTTATGGTTCCATTGCATGCAACTGTTGGAGACTTGAAGAAAGCTGCTGAGGCTGCAATGAGGGACACATACTGCATAGCAGAAAGGCTTATAGTGACAGACTTTGGAGAATTGATGGGAGTGAGTGATGAAGAAGTGCTGTTTGGACTAATCCAATCAGGTATGGAACTTTGTGTGAGGGGGATTGCTATTGATTTGTTAACTCCATTGAAGTATCAGGGTGGGGCAGATAATTGGAAAGTGAGGTGTGAATGTGGAGCTGAAGATGATGATGGGGAGAGAATGGTGGCATGTGACATTTGTGAGGTATGGCAGCATACAAGATGCTGTGGCATTGATGATTCTGAGACAGTGCCACCATTGTTTGTATGCACTGGATGTTGTGATTCAGTTGCACCTACATGTATTGAATCTGCTATTGATATGGATTGTGTGGATAGTTATCTGATTTCACCACAGCCAACACACTTACTGGAATATGGATATGGCTACTGA 2064 0.4215 MSFSVTEPCKKRKLRNPKVFRLNSFPVTFSGPFHENVRLFLEECGDLDEYTVLGNPLWCTLLVHNNTNLMAPLYTLEEDVYHSSHPFCHYCRSAGWSGHFVTKRRYHFIIPMNSGWHKPLDDSAIDNQSHLLHGVIHCNGCGHLICINGYEGGSKVLSGREIMDLWDRICTNLKARRISVEDVSRKRSMDLRLLHGVAYGHSWFGRWGYRFFRGSFGVTEKNYYEAIETLGSWELDEIARDLSKAKHSKEIKQMIQCYRDMSDTQITTIRDLLRLMLTVKPRAPATKITVTCSVPSSFNLRNTTRHALSNGTSIMKEKSVRYKKFNGIVANMDSRWPKRRLEFAAQVIVDALNEHKGMKSGSAGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNHVVRRMVNPYTRILEYTIHEIGNGIKEPEMEPEIMAHVYPRVESSRRPNFDVNNDVVYVYKDVLLGYPDSEQVDMAVQTILDSRHFVKEFGLMDEMEQVLTFICKMKPNVADTKYELREAGCSVMVMVPLHATVGDLKKAAEAAMRDTYCIAERLIVTDFGELMGVSDEEVLFGLIQSGMELCVRGIAIDLLTPLKYQGGADNWKVRCECGAEDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCTGCCDSVAPTCIESAIDMDCVDSYLISPQPTHLLEYGYGY 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0288 687 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 11 655 - -
Lal22g0288 687 CDD PHD_MMD1_like 606 650 - -
Lal22g0288 687 ProSitePatterns Zinc finger PHD-type signature. 606 650 IPR019786 -
Lal22g0288 687 SUPERFAMILY FYVE/PHD zinc finger 592 653 IPR011011 -
Lal22g0288 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 656 IPR013083 -
Lal22g0288 687 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 11 655 - -
Lal22g0288 687 SMART PHD_3 605 651 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0288 Lal-Chr22 1834122 1836685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0288 10 656 PHD Transcription Factor Family AT5G22260 31.805 1.44e-107 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0288 - - gmx:100797388 999.964