Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0283 ATGAATTCTCTTCTCTCCTTTTTCTCTCTCTTATTCTTATTCGCCATTGCAAGCGGAGACGATCTAGCTTCTGACAGAGACGCTCTGTTAATCCTACGCGCCGCCGTGCGTGGCCGTTTACTCCTCTGGAACATCACCGATACAAATCCTTGTTCGTGGAACGGTGTGTCCTGCAATGAAAACCGGGTCACAGTGTTGCGGTTTCCGGGTATGAGTCTCTCAGGGAACCTTCCTTTGGGTTTAGGGAACCTTACTCAGTTACAAACCCTTTCTCTCCGCTTCAACACGCTAAACGGGACAATTCCTTCGGATTTCAATAAGCTTGTTAACTTGAGGAACCTTTTTCTCAATAATAACCTCTTTTCAGGTGAAATTCCAGATTGTGTGTTCAAGTTGCAAAATTTGGTTAAGTTGAATTTAGGCAGCAATAATTTTAGTGGAGAGATCTCACCAAAGTTTAATGACCTCACTCGTTTGGAAACCCTCATTGTTGAGAATAACAATTTTAGTGGGTCAGTTCCTGACCTTAATGTTCATTCTCTTAAGAATTTCAATGTTTCAAATAATCACTTAAGTGGGTCCATTCCTAAGAGATTTTCAGATTTTAATGAGAGTGCTTTTGCTGGGAATTCACTATGTGGAAAGCCCTTGCAACCTTGCACTGAAACTGAGAGTGGAAAAAATAAATTGTCTGGAGGGGCAATTGCAGGAATTGTGATTGGTTCTTCGGTTGGTGTGTTATTGATTGTGCTGCTTTTATTCTTATTGTGTAGAAAATTGAGTGGTAAAGATGATTCCAACGATGTAGTACCTTCAAAGCAGGTTGAGGCTGTTGTGCCGCGTGAGAAGAGTGGCAATGATAGTAATTCAGTTAGTGCACCAGCAAAAACTGATTTTAAGAATGATAATAGTTTGGTTTTCCTTAGGGAGGTGAATAAGCCTTTTGATCTCGACGAATTGCTGAGGGCTTCAGCTGAAGTGTTGGGGAAGGGGACTTTTGGAACCACTTATAGGGCCACTATTAATATGGGGATGAGTGTGGCAGTGAAGAGATTGAAGGATGTTACTGCACCAGAAAATGAAATCAGAAAGAAAATTGAGCAAGTGGGTAAGGTGGCTCATGTGAACTTGGTCCCATTCAGAGCCTATTATTTTAGCAGAGATGAAAAGCTTATTTTGAATGATTACATGCCAATGGGAAGCTTATCTGCCCTCTTACATGCAAATAATGGAGGTGGCAGGACACCATTGGATTGGGAAACAAGGTCCGGCATTGCCCTTGGTGCTGCTCGTGGGGTTGCATACCTACATTTGCAAGGCCCAACATCCTCTCATGGAAATATCACATCCTCAAATATCCTTCTCACCAAATCTTACGAAGCTCGTGTTTCTGACTTTGGCCTTGCTTATATTGCATTCCCGACCTTTACACCTAACCGTGTATCTGGCTACCGTGCCCCAGAGGTCACGGATGCTGGCAAAGTATCCCAAAAAGCAGATGTCTATAGCTTTGGCATAATGCTTTTGGAGCTGCTTACAGGGAAGGCTCCTAGTCATTCATCACTGAATGAAGAAGGAGTAGACCTTCCAAGATGGGTCCAATCAGTGGTTCAGGAGGAATGGAGCAATGAGGTTTTCGATATGGAGCTTCTCAGATACCAGAATGTTGAGGAGGAAATGGTCAAGCTCTTGCAGCTTGCAATGGAATGTACTGATCGATATCCTGACAAGAGACCTTCCATGAATGTGGTGGAAATCAGGATTCAGGAAATTTGTAATTCTAGCTTACAGAAAGAGGGATTTTCCTAA 1809 0.4273 MNSLLSFFSLLFLFAIASGDDLASDRDALLILRAAVRGRLLLWNITDTNPCSWNGVSCNENRVTVLRFPGMSLSGNLPLGLGNLTQLQTLSLRFNTLNGTIPSDFNKLVNLRNLFLNNNLFSGEIPDCVFKLQNLVKLNLGSNNFSGEISPKFNDLTRLETLIVENNNFSGSVPDLNVHSLKNFNVSNNHLSGSIPKRFSDFNESAFAGNSLCGKPLQPCTETESGKNKLSGGAIAGIVIGSSVGVLLIVLLLFLLCRKLSGKDDSNDVVPSKQVEAVVPREKSGNDSNSVSAPAKTDFKNDNSLVFLREVNKPFDLDELLRASAEVLGKGTFGTTYRATINMGMSVAVKRLKDVTAPENEIRKKIEQVGKVAHVNLVPFRAYYFSRDEKLILNDYMPMGSLSALLHANNGGGRTPLDWETRSGIALGAARGVAYLHLQGPTSSHGNITSSNILLTKSYEARVSDFGLAYIAFPTFTPNRVSGYRAPEVTDAGKVSQKADVYSFGIMLLELLTGKAPSHSSLNEEGVDLPRWVQSVVQEEWSNEVFDMELLRYQNVEEEMVKLLQLAMECTDRYPDKRPSMNVVEIRIQEICNSSLQKEGFS 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0283 602 SMART LRR_typ_2 84 107 IPR003591 -
Lal22g0283 602 SMART LRR_typ_2 108 132 IPR003591 -
Lal22g0283 602 SMART LRR_typ_2 156 179 IPR003591 -
Lal22g0283 602 Coils Coil 553 573 - -
Lal22g0283 602 SUPERFAMILY L domain-like 41 202 - -
Lal22g0283 602 Gene3D Phosphorylase Kinase; domain 1 289 396 - -
Lal22g0283 602 ProSiteProfiles Protein kinase domain profile. 322 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal22g0283 602 Gene3D Ribonuclease Inhibitor 177 221 IPR032675 -
Lal22g0283 602 SUPERFAMILY Protein kinase-like (PK-like) 326 584 IPR011009 -
Lal22g0283 602 Gene3D Ribonuclease Inhibitor 22 176 IPR032675 -
Lal22g0283 602 Pfam Leucine rich repeat N-terminal domain 23 59 IPR013210 -
Lal22g0283 602 Pfam Protein tyrosine and serine/threonine kinase 326 584 IPR001245 GO:0004672|GO:0006468
Lal22g0283 602 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Lal22g0283 602 PANTHER INACTIVE RECEPTOR KINASE-RELATED 3 597 - -
Lal22g0283 602 Gene3D Transferase(Phosphotransferase) domain 1 397 600 - -
Lal22g0283 602 PANTHER OS05G0588300 PROTEIN 3 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0283 Lal-Chr22 1797929 1801162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0283 21 591 Receptor kinase-like Gene Family AT1G48480 54.739 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lal22g0283 PK_Tyr_Ser-Thr 1.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0283 - - aprc:113846223 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1308 18 15605116 15608217 Lal22g0283 22 1797929 1801162 LSH
Lal22g0283 22 1797929 1801162 Lal6g0306 6 1961180 1964723 LSH